miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24171 3' -61.1 NC_005263.2 + 41153 0.66 0.411218
Target:  5'- aCCGgcGUUcGcGCGGCGUgggcgGCCGUCGUc -3'
miRNA:   3'- gGGCuuCGA-C-CGCCGCA-----UGGCGGCGu -5'
24171 3' -61.1 NC_005263.2 + 21991 0.66 0.411218
Target:  5'- aCCCGcugacuucGAGC-GGC-GCGUACCaggacgcgcucgGCCGCAu -3'
miRNA:   3'- -GGGC--------UUCGaCCGcCGCAUGG------------CGGCGU- -5'
24171 3' -61.1 NC_005263.2 + 23801 0.66 0.410316
Target:  5'- gCCCGu-GCcGGCGGcCGUcuugaucGUCGCCGCGa -3'
miRNA:   3'- -GGGCuuCGaCCGCC-GCA-------UGGCGGCGU- -5'
24171 3' -61.1 NC_005263.2 + 3917 0.66 0.402255
Target:  5'- gCCGGgcGGCaaUGGCGGCagGCCGaCCgGCAg -3'
miRNA:   3'- gGGCU--UCG--ACCGCCGcaUGGC-GG-CGU- -5'
24171 3' -61.1 NC_005263.2 + 23258 0.66 0.402255
Target:  5'- gCCGccGGCUGGCGcacCGgcACCGCCGUu -3'
miRNA:   3'- gGGCu-UCGACCGCc--GCa-UGGCGGCGu -5'
24171 3' -61.1 NC_005263.2 + 24286 0.66 0.400478
Target:  5'- aCCGgcGCUuucGCGGCGacgaucaagacgGCCGCCgGCAc -3'
miRNA:   3'- gGGCuuCGAc--CGCCGCa-----------UGGCGG-CGU- -5'
24171 3' -61.1 NC_005263.2 + 30351 0.66 0.384707
Target:  5'- gCCGAGcGC-GGCcGCGcUGCCGCCGg- -3'
miRNA:   3'- gGGCUU-CGaCCGcCGC-AUGGCGGCgu -5'
24171 3' -61.1 NC_005263.2 + 24932 0.66 0.384707
Target:  5'- aCCCGuucGgUGGCGGCGgACgGCgGUg -3'
miRNA:   3'- -GGGCuu-CgACCGCCGCaUGgCGgCGu -5'
24171 3' -61.1 NC_005263.2 + 3201 0.66 0.384707
Target:  5'- gCCGGugAGCcGGCccGGCGcGCCGcCCGCc -3'
miRNA:   3'- gGGCU--UCGaCCG--CCGCaUGGC-GGCGu -5'
24171 3' -61.1 NC_005263.2 + 15832 0.66 0.384707
Target:  5'- cUCCGAc-CUGGCGcgcuucGCGUGgcUCGCCGCGa -3'
miRNA:   3'- -GGGCUucGACCGC------CGCAU--GGCGGCGU- -5'
24171 3' -61.1 NC_005263.2 + 23318 0.66 0.376125
Target:  5'- gCC-AGGCgGGCGGC--ACCGuuGCAu -3'
miRNA:   3'- gGGcUUCGaCCGCCGcaUGGCggCGU- -5'
24171 3' -61.1 NC_005263.2 + 23928 0.66 0.376125
Target:  5'- aCCGucGCuuUGGCGGCuUGCgCGUCGUg -3'
miRNA:   3'- gGGCuuCG--ACCGCCGcAUG-GCGGCGu -5'
24171 3' -61.1 NC_005263.2 + 40902 0.66 0.376125
Target:  5'- gCCUGAucGCUGGaaaGGCGca--GCCGCAc -3'
miRNA:   3'- -GGGCUu-CGACCg--CCGCauggCGGCGU- -5'
24171 3' -61.1 NC_005263.2 + 27014 0.66 0.376125
Target:  5'- -aUGGucAGUUGuGCGGCGUGCCgaccugGCCGCc -3'
miRNA:   3'- ggGCU--UCGAC-CGCCGCAUGG------CGGCGu -5'
24171 3' -61.1 NC_005263.2 + 47635 0.66 0.376125
Target:  5'- gCCGAcaaucGCgGGCGGCGgcacaaaCGCCGUg -3'
miRNA:   3'- gGGCUu----CGaCCGCCGCaug----GCGGCGu -5'
24171 3' -61.1 NC_005263.2 + 2906 0.67 0.354424
Target:  5'- gCCGAGacguGCUGcGCGGcCGUcguaaccgucaacguGCCGCUGUAg -3'
miRNA:   3'- gGGCUU----CGAC-CGCC-GCA---------------UGGCGGCGU- -5'
24171 3' -61.1 NC_005263.2 + 37909 0.67 0.351164
Target:  5'- gCCCGAGGCcGGCgaGGCuucgGCCuGCuCGCGa -3'
miRNA:   3'- -GGGCUUCGaCCG--CCGca--UGG-CG-GCGU- -5'
24171 3' -61.1 NC_005263.2 + 24088 0.67 0.351164
Target:  5'- aCCGAuccGGCcGGCGGCGgcUACgUGCCGg- -3'
miRNA:   3'- gGGCU---UCGaCCGCCGC--AUG-GCGGCgu -5'
24171 3' -61.1 NC_005263.2 + 29698 0.67 0.351164
Target:  5'- -aCGAAGCaGaCGGCGUagcacuucugGCCGUCGCGu -3'
miRNA:   3'- ggGCUUCGaCcGCCGCA----------UGGCGGCGU- -5'
24171 3' -61.1 NC_005263.2 + 6236 0.67 0.351164
Target:  5'- gCCCGAucgcucgcGGCcagGcGCGGuCGUGCCGUCGg- -3'
miRNA:   3'- -GGGCU--------UCGa--C-CGCC-GCAUGGCGGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.