miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24172 3' -57.9 NC_005263.2 + 16136 0.66 0.500402
Target:  5'- gCAGGUUGCGguG-CGCaCCuuCAACAGg -3'
miRNA:   3'- -GUCCAACGCguCuGCG-GGccGUUGUU- -5'
24172 3' -57.9 NC_005263.2 + 27132 0.66 0.479625
Target:  5'- gCAGGc-GCGCAGcCGCgUCGGCGAUg- -3'
miRNA:   3'- -GUCCaaCGCGUCuGCG-GGCCGUUGuu -5'
24172 3' -57.9 NC_005263.2 + 21178 0.66 0.479625
Target:  5'- aCGGGgccgGaCGCGGACGCgCgCGGCGcggGCGAg -3'
miRNA:   3'- -GUCCaa--C-GCGUCUGCG-G-GCCGU---UGUU- -5'
24172 3' -57.9 NC_005263.2 + 47305 0.66 0.459278
Target:  5'- -cGGUccUGCGCcGGCGgCCGGCAcgcuCAAg -3'
miRNA:   3'- guCCA--ACGCGuCUGCgGGCCGUu---GUU- -5'
24172 3' -57.9 NC_005263.2 + 23300 0.66 0.459278
Target:  5'- aUAGGccgaauacGCGCcgccGACGCCCGGCGAg-- -3'
miRNA:   3'- -GUCCaa------CGCGu---CUGCGGGCCGUUguu -5'
24172 3' -57.9 NC_005263.2 + 22539 0.67 0.449278
Target:  5'- aCGGGcgGCGCGGACGCCgacguCGcGCucGCGAu -3'
miRNA:   3'- -GUCCaaCGCGUCUGCGG-----GC-CGu-UGUU- -5'
24172 3' -57.9 NC_005263.2 + 3211 0.67 0.446302
Target:  5'- -cGGcccgGCGCGccgcccgccccgauGACGCCgGGCAGCAu -3'
miRNA:   3'- guCCaa--CGCGU--------------CUGCGGgCCGUUGUu -5'
24172 3' -57.9 NC_005263.2 + 23911 0.67 0.433533
Target:  5'- cCAGGUcGCGCGcaucgcuugguggcuGAUGCUCGGCgGGCAu -3'
miRNA:   3'- -GUCCAaCGCGU---------------CUGCGGGCCG-UUGUu -5'
24172 3' -57.9 NC_005263.2 + 29052 0.67 0.429647
Target:  5'- gCAGGccGCGCGGcGCGUCCucggGGCGGCGc -3'
miRNA:   3'- -GUCCaaCGCGUC-UGCGGG----CCGUUGUu -5'
24172 3' -57.9 NC_005263.2 + 19496 0.67 0.409587
Target:  5'- aCGGGUUGgacgugacgaaccUGCAcACGUCCGGCGACc- -3'
miRNA:   3'- -GUCCAAC-------------GCGUcUGCGGGCCGUUGuu -5'
24172 3' -57.9 NC_005263.2 + 9453 0.67 0.40117
Target:  5'- aCGGGcaccacggGCaGCGGcGCGCCCGGCuGCAGc -3'
miRNA:   3'- -GUCCaa------CG-CGUC-UGCGGGCCGuUGUU- -5'
24172 3' -57.9 NC_005263.2 + 16729 0.67 0.40117
Target:  5'- -cGGUgGCGCAauUGCCCGGCGuCAGu -3'
miRNA:   3'- guCCAaCGCGUcuGCGGGCCGUuGUU- -5'
24172 3' -57.9 NC_005263.2 + 6832 0.68 0.382866
Target:  5'- gCGGGaaGCGCAGcgacggcgacACGaCCGGCGACAGg -3'
miRNA:   3'- -GUCCaaCGCGUC----------UGCgGGCCGUUGUU- -5'
24172 3' -57.9 NC_005263.2 + 10168 0.68 0.373924
Target:  5'- -cGGUUGCGCAccGGCuGCC-GGCGGCGc -3'
miRNA:   3'- guCCAACGCGU--CUG-CGGgCCGUUGUu -5'
24172 3' -57.9 NC_005263.2 + 26515 0.69 0.33138
Target:  5'- --uGUUGCGCGcGGCGUcgacgCCGGCGGCGAg -3'
miRNA:   3'- gucCAACGCGU-CUGCG-----GGCCGUUGUU- -5'
24172 3' -57.9 NC_005263.2 + 30473 0.69 0.323311
Target:  5'- --cGUUGCGCcacauccGGCGCCCuGGCGACGu -3'
miRNA:   3'- gucCAACGCGu------CUGCGGG-CCGUUGUu -5'
24172 3' -57.9 NC_005263.2 + 35513 0.69 0.307614
Target:  5'- -cGGUgacacugGCGCGccgacuGCGCCCGGCGGCGc -3'
miRNA:   3'- guCCAa------CGCGUc-----UGCGGGCCGUUGUu -5'
24172 3' -57.9 NC_005263.2 + 30716 0.69 0.299986
Target:  5'- cCAGGc-GCGCGGcCGCgCCGGCAgACAGc -3'
miRNA:   3'- -GUCCaaCGCGUCuGCG-GGCCGU-UGUU- -5'
24172 3' -57.9 NC_005263.2 + 28977 0.7 0.292506
Target:  5'- -----cGCGCAaGCGCCCGGCGAUg- -3'
miRNA:   3'- guccaaCGCGUcUGCGGGCCGUUGuu -5'
24172 3' -57.9 NC_005263.2 + 27045 0.72 0.219692
Target:  5'- gCAGGaUGCGCGGcCGCCCgucgGGCAGgAAg -3'
miRNA:   3'- -GUCCaACGCGUCuGCGGG----CCGUUgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.