miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24172 5' -59.2 NC_005263.2 + 2288 0.66 0.451966
Target:  5'- gUCgGCaGGUcGUGCGCCGUGGccGGCa -3'
miRNA:   3'- aAGgUGaCCGcCGUGCGGCACCu-UCG- -5'
24172 5' -59.2 NC_005263.2 + 35532 0.66 0.442214
Target:  5'- -aCUGCgcccGGCGGCGCGCgGgcGGgcGCu -3'
miRNA:   3'- aaGGUGa---CCGCCGUGCGgCa-CCuuCG- -5'
24172 5' -59.2 NC_005263.2 + 34372 0.66 0.423072
Target:  5'- -gCCGCcGGCGGUaACGCCGc--GAGCa -3'
miRNA:   3'- aaGGUGaCCGCCG-UGCGGCaccUUCG- -5'
24172 5' -59.2 NC_005263.2 + 24571 0.66 0.423072
Target:  5'- -gCCAC-GGuCGGCACGCCGaauaucaugucGGgcGCa -3'
miRNA:   3'- aaGGUGaCC-GCCGUGCGGCa----------CCuuCG- -5'
24172 5' -59.2 NC_005263.2 + 46430 0.66 0.413689
Target:  5'- -aCCgaACUGGCGGCGCGCUacaaaAAGCu -3'
miRNA:   3'- aaGG--UGACCGCCGUGCGGcacc-UUCG- -5'
24172 5' -59.2 NC_005263.2 + 6609 0.67 0.404436
Target:  5'- -aUCGCguucGGCGGCGCGCuCGgcgcGGucGAGCa -3'
miRNA:   3'- aaGGUGa---CCGCCGUGCG-GCa---CC--UUCG- -5'
24172 5' -59.2 NC_005263.2 + 23763 0.67 0.404436
Target:  5'- -aCUACgGGCgucGGCGCGCCGUuuugcGGAAuuGCg -3'
miRNA:   3'- aaGGUGaCCG---CCGUGCGGCA-----CCUU--CG- -5'
24172 5' -59.2 NC_005263.2 + 8909 0.67 0.395314
Target:  5'- --aUACUGGCGGCAggaUGUCGUcGAGGUc -3'
miRNA:   3'- aagGUGACCGCCGU---GCGGCAcCUUCG- -5'
24172 5' -59.2 NC_005263.2 + 20782 0.67 0.386326
Target:  5'- -gCCGCUGaucguCGGCGCGUCG-GGucGCg -3'
miRNA:   3'- aaGGUGACc----GCCGUGCGGCaCCuuCG- -5'
24172 5' -59.2 NC_005263.2 + 24691 0.67 0.377475
Target:  5'- -gCCGgUaacGGCGGCGCGCCGaacgugccgGGcGGCg -3'
miRNA:   3'- aaGGUgA---CCGCCGUGCGGCa--------CCuUCG- -5'
24172 5' -59.2 NC_005263.2 + 24240 0.67 0.377475
Target:  5'- cUUCGCcuugcGGCGGUACGCCGccagcuucgggUGGuuGCa -3'
miRNA:   3'- aAGGUGa----CCGCCGUGCGGC-----------ACCuuCG- -5'
24172 5' -59.2 NC_005263.2 + 27237 0.67 0.36876
Target:  5'- -gCCACUGGCGcaGCGCCGUuGcGAcGCu -3'
miRNA:   3'- aaGGUGACCGCcgUGCGGCA-C-CUuCG- -5'
24172 5' -59.2 NC_005263.2 + 27320 0.67 0.360185
Target:  5'- -cCCAUUGcGuCGGCGCcCCGUucaGGAAGCc -3'
miRNA:   3'- aaGGUGAC-C-GCCGUGcGGCA---CCUUCG- -5'
24172 5' -59.2 NC_005263.2 + 47211 0.68 0.343456
Target:  5'- -cCCGCcGGCGGCGacCGCCGcgcugaacGAAGCg -3'
miRNA:   3'- aaGGUGaCCGCCGU--GCGGCac------CUUCG- -5'
24172 5' -59.2 NC_005263.2 + 18857 0.68 0.343456
Target:  5'- -gUgACUGGUGuGC-CGCaGUGGGAGCg -3'
miRNA:   3'- aaGgUGACCGC-CGuGCGgCACCUUCG- -5'
24172 5' -59.2 NC_005263.2 + 24842 0.68 0.327293
Target:  5'- cUUCCAC-GGCGuGC-CGCCaGUGGAAa- -3'
miRNA:   3'- -AAGGUGaCCGC-CGuGCGG-CACCUUcg -5'
24172 5' -59.2 NC_005263.2 + 8379 0.68 0.327293
Target:  5'- -gUCAgUGGCgcaGGCAgGCCGaccaGGAAGCg -3'
miRNA:   3'- aaGGUgACCG---CCGUgCGGCa---CCUUCG- -5'
24172 5' -59.2 NC_005263.2 + 31556 0.68 0.319425
Target:  5'- -gUCGCUgcccaGGCGGCGCGCCGUGc---- -3'
miRNA:   3'- aaGGUGA-----CCGCCGUGCGGCACcuucg -5'
24172 5' -59.2 NC_005263.2 + 46841 0.68 0.319425
Target:  5'- -gCCA--GGCGGCGCGCCaaGG-AGCa -3'
miRNA:   3'- aaGGUgaCCGCCGUGCGGcaCCuUCG- -5'
24172 5' -59.2 NC_005263.2 + 30787 0.68 0.318647
Target:  5'- -gCCACcGGCGccgggccgaauucGCGCGCCGUGGcgacuGCc -3'
miRNA:   3'- aaGGUGaCCGC-------------CGUGCGGCACCuu---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.