Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24173 | 3' | -53.2 | NC_005263.2 | + | 16527 | 0.69 | 0.653531 |
Target: 5'- cCGGCAAauGucGGCGuUGUCGAgcaCGGCGc -3' miRNA: 3'- -GCCGUU--CuuUCGC-ACAGCUa--GCCGCc -5' |
|||||||
24173 | 3' | -53.2 | NC_005263.2 | + | 43077 | 0.69 | 0.642411 |
Target: 5'- uCGGCcgccGGGccGGC-UGUCGAgcgCGGCGGa -3' miRNA: 3'- -GCCG----UUCuuUCGcACAGCUa--GCCGCC- -5' |
|||||||
24173 | 3' | -53.2 | NC_005263.2 | + | 32211 | 0.69 | 0.631282 |
Target: 5'- gCGGCGAGAucAGCGUGUaaaGcugCaGCGGg -3' miRNA: 3'- -GCCGUUCUu-UCGCACAg--Cua-GcCGCC- -5' |
|||||||
24173 | 3' | -53.2 | NC_005263.2 | + | 32887 | 0.69 | 0.616817 |
Target: 5'- gCGGCGAaauuucguugacccGGAAGCGcuugccgacGUCGcgCGGCGGc -3' miRNA: 3'- -GCCGUU--------------CUUUCGCa--------CAGCuaGCCGCC- -5' |
|||||||
24173 | 3' | -53.2 | NC_005263.2 | + | 38837 | 0.7 | 0.563766 |
Target: 5'- aCGGCAAGAugaucgcggacucGAGCGgcgucaCGGUCGGCa- -3' miRNA: 3'- -GCCGUUCU-------------UUCGCaca---GCUAGCCGcc -5' |
|||||||
24173 | 3' | -53.2 | NC_005263.2 | + | 33323 | 0.7 | 0.561577 |
Target: 5'- aCGGCAAGAgguAGGCGUgcgcGUCGGgcagcuuugcgacuUCGGCa- -3' miRNA: 3'- -GCCGUUCU---UUCGCA----CAGCU--------------AGCCGcc -5' |
|||||||
24173 | 3' | -53.2 | NC_005263.2 | + | 32888 | 0.71 | 0.521568 |
Target: 5'- gCGGCGAGuuucguGGCGUcggCG-UCGGCGGc -3' miRNA: 3'- -GCCGUUCuu----UCGCAca-GCuAGCCGCC- -5' |
|||||||
24173 | 3' | -53.2 | NC_005263.2 | + | 29106 | 0.73 | 0.433533 |
Target: 5'- aCGGCGGGAaaGgcagaaugagcgaauAGCGUGUCG-UCGGCa- -3' miRNA: 3'- -GCCGUUCU--U---------------UCGCACAGCuAGCCGcc -5' |
|||||||
24173 | 3' | -53.2 | NC_005263.2 | + | 20671 | 0.74 | 0.365125 |
Target: 5'- gCGGCcgucGAAAGCGUGU---UCGGCGGc -3' miRNA: 3'- -GCCGuu--CUUUCGCACAgcuAGCCGCC- -5' |
|||||||
24173 | 3' | -53.2 | NC_005263.2 | + | 22364 | 1.1 | 0.001362 |
Target: 5'- gCGGCAAGAAAGCGUGUCGAUCGGCGGc -3' miRNA: 3'- -GCCGUUCUUUCGCACAGCUAGCCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home