miRNA display CGI


Results 21 - 40 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24173 5' -59.4 NC_005263.2 + 19754 0.66 0.48347
Target:  5'- uGGCgCGCuGGCG-GCGCucGUgGCCGUGUg -3'
miRNA:   3'- -CCG-GCGcUUGCaUGCG--CGgCGGCACG- -5'
24173 5' -59.4 NC_005263.2 + 41359 0.66 0.48347
Target:  5'- cGGCgCGCGAuggACGUgACGCGCgaGUguguaCGUGUg -3'
miRNA:   3'- -CCG-GCGCU---UGCA-UGCGCGg-CG-----GCACG- -5'
24173 5' -59.4 NC_005263.2 + 42329 0.66 0.48347
Target:  5'- cGGCCGCaaggugccgaccGaAGCGUaucGCGUGCUGCUGcaGCg -3'
miRNA:   3'- -CCGGCG------------C-UUGCA---UGCGCGGCGGCa-CG- -5'
24173 5' -59.4 NC_005263.2 + 10011 0.66 0.48347
Target:  5'- cGCCagguGCGGGCGcagcAC-CGCCGCCGaGCu -3'
miRNA:   3'- cCGG----CGCUUGCa---UGcGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 6243 0.66 0.48347
Target:  5'- cGCuCGCGGccagGCGcgguCGUGCCGUCGgGCa -3'
miRNA:   3'- cCG-GCGCU----UGCau--GCGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 2935 0.66 0.48347
Target:  5'- uGCuCGCGAAUGcgccauCGcCGCCGCCGaaGCc -3'
miRNA:   3'- cCG-GCGCUUGCau----GC-GCGGCGGCa-CG- -5'
24173 5' -59.4 NC_005263.2 + 7181 0.66 0.48347
Target:  5'- cGCUGCGAuacccGgGUAUGUGCgGCUGcGCu -3'
miRNA:   3'- cCGGCGCU-----UgCAUGCGCGgCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 39067 0.66 0.48347
Target:  5'- --aCGCGGACGUcguagccgGCuCGCCGUCGcGCg -3'
miRNA:   3'- ccgGCGCUUGCA--------UGcGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 42472 0.66 0.48347
Target:  5'- cGGUaacgGC-AugGUGCGCGuuGCC-UGCa -3'
miRNA:   3'- -CCGg---CGcUugCAUGCGCggCGGcACG- -5'
24173 5' -59.4 NC_005263.2 + 445 0.66 0.48347
Target:  5'- cGCCGCG-ACGUAauagaGCcCCGCUGacGCg -3'
miRNA:   3'- cCGGCGCuUGCAUg----CGcGGCGGCa-CG- -5'
24173 5' -59.4 NC_005263.2 + 29760 0.66 0.48347
Target:  5'- cGCCGgGuucuGCGgguucagcaGCGUGCCGUCG-GCg -3'
miRNA:   3'- cCGGCgCu---UGCa--------UGCGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 37555 0.66 0.482482
Target:  5'- cGGCCacGUGAAgaucaguCGUuccggUGCGCUGCuCGUGCg -3'
miRNA:   3'- -CCGG--CGCUU-------GCAu----GCGCGGCG-GCACG- -5'
24173 5' -59.4 NC_005263.2 + 10279 0.66 0.480508
Target:  5'- cGCCGCGucgGCGacaugagcgccggaUGCGCGCcCGUCGUcaacgaGCg -3'
miRNA:   3'- cCGGCGCu--UGC--------------AUGCGCG-GCGGCA------CG- -5'
24173 5' -59.4 NC_005263.2 + 441 0.66 0.477555
Target:  5'- cGGCaguGCGGaacgcaaucuucacgGCGUuuGUGCCGCCGcccGCg -3'
miRNA:   3'- -CCGg--CGCU---------------UGCAugCGCGGCGGCa--CG- -5'
24173 5' -59.4 NC_005263.2 + 25013 0.66 0.473632
Target:  5'- uGGCUGCGGugGCGgugGCuGCGgUGgCGUGUa -3'
miRNA:   3'- -CCGGCGCU--UGCa--UG-CGCgGCgGCACG- -5'
24173 5' -59.4 NC_005263.2 + 8451 0.66 0.473632
Target:  5'- cGGCCGCuaGGAUGUucaugcACGCGuuGCuCGUuCa -3'
miRNA:   3'- -CCGGCG--CUUGCA------UGCGCggCG-GCAcG- -5'
24173 5' -59.4 NC_005263.2 + 10702 0.66 0.473632
Target:  5'- cGGCCGC--GCG-ACGCGaugcaCGUCGcGCa -3'
miRNA:   3'- -CCGGCGcuUGCaUGCGCg----GCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 9561 0.66 0.473632
Target:  5'- aGGUCGacaaaGAACGUguccaggcgcuGCGUGCCGUCccauUGCg -3'
miRNA:   3'- -CCGGCg----CUUGCA-----------UGCGCGGCGGc---ACG- -5'
24173 5' -59.4 NC_005263.2 + 2700 0.66 0.473632
Target:  5'- cGGCCGCucggcAgGUGCauGCGCagCGCgCGUGCa -3'
miRNA:   3'- -CCGGCGcu---UgCAUG--CGCG--GCG-GCACG- -5'
24173 5' -59.4 NC_005263.2 + 42700 0.66 0.473632
Target:  5'- uGCCGCGAugGcagaagaACGCGaacaggucaaCGCCG-GCu -3'
miRNA:   3'- cCGGCGCUugCa------UGCGCg---------GCGGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.