miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24174 3' -55.1 NC_005263.2 + 32085 0.66 0.732065
Target:  5'- aCGUG-CGUcACG-UGCGGCGGCguCGGUg -3'
miRNA:   3'- -GCACuGCA-UGCuACGCUGCUG--GCCGu -5'
24174 3' -55.1 NC_005263.2 + 25035 0.66 0.732065
Target:  5'- gGUGGCGUguACGcgGCaggcaacacGACGAucccgacgucgaCCGGCAa -3'
miRNA:   3'- gCACUGCA--UGCuaCG---------CUGCU------------GGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 34675 0.66 0.721483
Target:  5'- cCGUcGACGU--GGUG-GAUGAUCGGCAg -3'
miRNA:   3'- -GCA-CUGCAugCUACgCUGCUGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 22467 0.66 0.718291
Target:  5'- --aGGCGUucACGAuugcUucuccuugucgccgGCGGCGGCCGGCGg -3'
miRNA:   3'- gcaCUGCA--UGCU----A--------------CGCUGCUGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 37326 0.66 0.710813
Target:  5'- aCGUcGAUGUcgaggGCGAUGCGuuccagucggucGCGGCCGuGCu -3'
miRNA:   3'- -GCA-CUGCA-----UGCUACGC------------UGCUGGC-CGu -5'
24174 3' -55.1 NC_005263.2 + 8693 0.66 0.710813
Target:  5'- gGUcGACG-ACaGGUGCGGCGACagguCGGCc -3'
miRNA:   3'- gCA-CUGCaUG-CUACGCUGCUG----GCCGu -5'
24174 3' -55.1 NC_005263.2 + 9526 0.66 0.700066
Target:  5'- uCGUGcggcCGUGCGcgGCaGCGACCGacGCGg -3'
miRNA:   3'- -GCACu---GCAUGCuaCGcUGCUGGC--CGU- -5'
24174 3' -55.1 NC_005263.2 + 40247 0.66 0.689253
Target:  5'- -uUGGCacgcuGUACGAagUGCGcgacGCGGCCGGCc -3'
miRNA:   3'- gcACUG-----CAUGCU--ACGC----UGCUGGCCGu -5'
24174 3' -55.1 NC_005263.2 + 9182 0.66 0.689253
Target:  5'- gCGcGACGU-CGAgcucggcGCGGCGcCCGGCu -3'
miRNA:   3'- -GCaCUGCAuGCUa------CGCUGCuGGCCGu -5'
24174 3' -55.1 NC_005263.2 + 20300 0.66 0.688169
Target:  5'- gGUGACGccGCGAUcacgacgGCGAUGuACCGcGCGa -3'
miRNA:   3'- gCACUGCa-UGCUA-------CGCUGC-UGGC-CGU- -5'
24174 3' -55.1 NC_005263.2 + 42006 0.67 0.667474
Target:  5'- -aUGACGUGCcg-GCaguGCGGCCGGCc -3'
miRNA:   3'- gcACUGCAUGcuaCGc--UGCUGGCCGu -5'
24174 3' -55.1 NC_005263.2 + 38497 0.67 0.65653
Target:  5'- cCGUGGC--GCGAcGCGAUGAUCGcGCu -3'
miRNA:   3'- -GCACUGcaUGCUaCGCUGCUGGC-CGu -5'
24174 3' -55.1 NC_005263.2 + 22207 0.67 0.65653
Target:  5'- cCGUuACGUACGucGCGGCcgucGCCGGCGu -3'
miRNA:   3'- -GCAcUGCAUGCuaCGCUGc---UGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 27508 0.67 0.642271
Target:  5'- --cGGCGUucacgaagccggucGCGGUGCccgucggcACGGCCGGCAg -3'
miRNA:   3'- gcaCUGCA--------------UGCUACGc-------UGCUGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 21099 0.67 0.634585
Target:  5'- gGUGugG-GCG--GCGACGAgcCCGGCGc -3'
miRNA:   3'- gCACugCaUGCuaCGCUGCU--GGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 1286 0.67 0.634585
Target:  5'- -cUGGCGcGCGuUGCGuuacGCGAUCGGCGu -3'
miRNA:   3'- gcACUGCaUGCuACGC----UGCUGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 44888 0.67 0.633487
Target:  5'- --cGGCGUcaucgggGCGG-GCGGCGGCCGGg- -3'
miRNA:   3'- gcaCUGCA-------UGCUaCGCUGCUGGCCgu -5'
24174 3' -55.1 NC_005263.2 + 26863 0.68 0.627996
Target:  5'- aCGUGGCGcgcaccgcgccguCGAUGCGAaaGCCGGUc -3'
miRNA:   3'- -GCACUGCau-----------GCUACGCUgcUGGCCGu -5'
24174 3' -55.1 NC_005263.2 + 28989 0.68 0.623604
Target:  5'- --cGGCGaUGCGcucggcGCGGcCGACCGGCAg -3'
miRNA:   3'- gcaCUGC-AUGCua----CGCU-GCUGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 7410 0.68 0.61263
Target:  5'- -----aGUGCGAUGCGGgaGAUCGGCGc -3'
miRNA:   3'- gcacugCAUGCUACGCUg-CUGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.