miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24174 3' -55.1 NC_005263.2 + 41372 0.74 0.305701
Target:  5'- aCGUGACGcGCGAgUGUGuACGugUGGCGc -3'
miRNA:   3'- -GCACUGCaUGCU-ACGC-UGCugGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 38497 0.67 0.65653
Target:  5'- cCGUGGC--GCGAcGCGAUGAUCGcGCu -3'
miRNA:   3'- -GCACUGcaUGCUaCGCUGCUGGC-CGu -5'
24174 3' -55.1 NC_005263.2 + 40247 0.66 0.689253
Target:  5'- -uUGGCacgcuGUACGAagUGCGcgacGCGGCCGGCc -3'
miRNA:   3'- gcACUG-----CAUGCU--ACGC----UGCUGGCCGu -5'
24174 3' -55.1 NC_005263.2 + 22467 0.66 0.718291
Target:  5'- --aGGCGUucACGAuugcUucuccuugucgccgGCGGCGGCCGGCGg -3'
miRNA:   3'- gcaCUGCA--UGCU----A--------------CGCUGCUGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 36153 0.72 0.353654
Target:  5'- aCGUGAgGUugGCGAcggccUGCG-CGACCGGUg -3'
miRNA:   3'- -GCACUgCA--UGCU-----ACGCuGCUGGCCGu -5'
24174 3' -55.1 NC_005263.2 + 43683 0.7 0.464429
Target:  5'- gGUGACGUACGAggauUGgGAgccgucacaCGugUGGCAa -3'
miRNA:   3'- gCACUGCAUGCU----ACgCU---------GCugGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 41582 0.7 0.464429
Target:  5'- uCGUcaGCGUcGCGAUGCucACGACCGGCu -3'
miRNA:   3'- -GCAc-UGCA-UGCUACGc-UGCUGGCCGu -5'
24174 3' -55.1 NC_005263.2 + 20937 0.7 0.505207
Target:  5'- --aGACGaaUGCGGUGaUGACGGCCGcGCGc -3'
miRNA:   3'- gcaCUGC--AUGCUAC-GCUGCUGGC-CGU- -5'
24174 3' -55.1 NC_005263.2 + 32312 0.68 0.579847
Target:  5'- aGUGucACGU-CGAU-CGACGACgGGCGa -3'
miRNA:   3'- gCAC--UGCAuGCUAcGCUGCUGgCCGU- -5'
24174 3' -55.1 NC_005263.2 + 1286 0.67 0.634585
Target:  5'- -cUGGCGcGCGuUGCGuuacGCGAUCGGCGu -3'
miRNA:   3'- gcACUGCaUGCuACGC----UGCUGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 7410 0.68 0.61263
Target:  5'- -----aGUGCGAUGCGGgaGAUCGGCGc -3'
miRNA:   3'- gcacugCAUGCUACGCUg-CUGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 13725 0.68 0.568993
Target:  5'- cCGUccGACGUGCuc-GCGGCGuuaccGCCGGCGg -3'
miRNA:   3'- -GCA--CUGCAUGcuaCGCUGC-----UGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 12529 0.73 0.313335
Target:  5'- -uUGGCGUucgcauucACGuucGCGGCGGCCGGCGg -3'
miRNA:   3'- gcACUGCA--------UGCua-CGCUGCUGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 26863 0.68 0.627996
Target:  5'- aCGUGGCGcgcaccgcgccguCGAUGCGAaaGCCGGUc -3'
miRNA:   3'- -GCACUGCau-----------GCUACGCUgcUGGCCGu -5'
24174 3' -55.1 NC_005263.2 + 38339 0.73 0.337097
Target:  5'- gCGcGAcCGUGCac-GCGGCGACCGGCGa -3'
miRNA:   3'- -GCaCU-GCAUGcuaCGCUGCUGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 33085 0.69 0.536772
Target:  5'- gCGUGAC--GCGAguuuaacacgGCGGCGauaGCCGGCGa -3'
miRNA:   3'- -GCACUGcaUGCUa---------CGCUGC---UGGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 21099 0.67 0.634585
Target:  5'- gGUGugG-GCG--GCGACGAgcCCGGCGc -3'
miRNA:   3'- gCACugCaUGCuaCGCUGCU--GGCCGU- -5'
24174 3' -55.1 NC_005263.2 + 42006 0.67 0.667474
Target:  5'- -aUGACGUGCcg-GCaguGCGGCCGGCc -3'
miRNA:   3'- gcACUGCAUGcuaCGc--UGCUGGCCGu -5'
24174 3' -55.1 NC_005263.2 + 9462 0.72 0.353654
Target:  5'- -uUGGCGU-CGAUGCG-CGACgCGGCu -3'
miRNA:   3'- gcACUGCAuGCUACGCuGCUG-GCCGu -5'
24174 3' -55.1 NC_005263.2 + 2656 0.7 0.464429
Target:  5'- --cGGCGUAuCGGcgGCGAC-ACCGGCAg -3'
miRNA:   3'- gcaCUGCAU-GCUa-CGCUGcUGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.