miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24174 5' -56.7 NC_005263.2 + 44897 0.66 0.666854
Target:  5'- cGggGCGgGCG--GCGGCCGg-GCCGGc -3'
miRNA:   3'- -CaaUGCaUGCagCGCCGGCagCGGCC- -5'
24174 5' -56.7 NC_005263.2 + 2439 0.66 0.666854
Target:  5'- -cUugGUACGgCGCGGCaaacacuugCG-CGCCGa -3'
miRNA:   3'- caAugCAUGCaGCGCCG---------GCaGCGGCc -5'
24174 5' -56.7 NC_005263.2 + 19086 0.66 0.666854
Target:  5'- -gUACG-GCGUCGCGGUgcgcaaCGcacUGCCGGu -3'
miRNA:   3'- caAUGCaUGCAGCGCCG------GCa--GCGGCC- -5'
24174 5' -56.7 NC_005263.2 + 17379 0.66 0.666854
Target:  5'- --cGCGUGaagcugucugcCGgCGCGGCCGcgCGCCuGGc -3'
miRNA:   3'- caaUGCAU-----------GCaGCGCCGGCa-GCGG-CC- -5'
24174 5' -56.7 NC_005263.2 + 46726 0.66 0.666854
Target:  5'- --cGCGgcuucaUGCGcUCGUucaaGGCCGcCGCCGGc -3'
miRNA:   3'- caaUGC------AUGC-AGCG----CCGGCaGCGGCC- -5'
24174 5' -56.7 NC_005263.2 + 17150 0.66 0.666854
Target:  5'- --aGCGgucgACGUCGCGGUguUCgGCUGGc -3'
miRNA:   3'- caaUGCa---UGCAGCGCCGgcAG-CGGCC- -5'
24174 5' -56.7 NC_005263.2 + 16426 0.66 0.666854
Target:  5'- --gGCGUcgGCGcuggCGCGGCgGgccUCGCUGGc -3'
miRNA:   3'- caaUGCA--UGCa---GCGCCGgC---AGCGGCC- -5'
24174 5' -56.7 NC_005263.2 + 41246 0.66 0.656083
Target:  5'- ---uCGUGCG-CGagGGCUaccuGUCGCCGGu -3'
miRNA:   3'- caauGCAUGCaGCg-CCGG----CAGCGGCC- -5'
24174 5' -56.7 NC_005263.2 + 16759 0.66 0.655004
Target:  5'- uUUAUGga-GUCGCgccugacGGCCGccggcguaUCGCCGGa -3'
miRNA:   3'- cAAUGCaugCAGCG-------CCGGC--------AGCGGCC- -5'
24174 5' -56.7 NC_005263.2 + 26946 0.66 0.64529
Target:  5'- aGUUGaugACGUCGCuGCCGUCGgUCGu -3'
miRNA:   3'- -CAAUgcaUGCAGCGcCGGCAGC-GGCc -5'
24174 5' -56.7 NC_005263.2 + 3304 0.66 0.64529
Target:  5'- ---uUGUGCG-CGCGGCgG-CGCgCGGu -3'
miRNA:   3'- caauGCAUGCaGCGCCGgCaGCG-GCC- -5'
24174 5' -56.7 NC_005263.2 + 6443 0.66 0.64529
Target:  5'- ---uCGUGCaUCGCGaGCaggcaGUCGCCGa -3'
miRNA:   3'- caauGCAUGcAGCGC-CGg----CAGCGGCc -5'
24174 5' -56.7 NC_005263.2 + 9509 0.66 0.64313
Target:  5'- --cGCGUGCGcgggcugaaucgUGCGGCCGU-GCgCGGc -3'
miRNA:   3'- caaUGCAUGCa-----------GCGCCGGCAgCG-GCC- -5'
24174 5' -56.7 NC_005263.2 + 42146 0.66 0.634486
Target:  5'- --gGCGUgucGCGagGUGcGCCaGUUGCCGGu -3'
miRNA:   3'- caaUGCA---UGCagCGC-CGG-CAGCGGCC- -5'
24174 5' -56.7 NC_005263.2 + 10888 0.66 0.62368
Target:  5'- --nGCGcGCGUCGUGagcggcguaucGCCG-CGCUGGg -3'
miRNA:   3'- caaUGCaUGCAGCGC-----------CGGCaGCGGCC- -5'
24174 5' -56.7 NC_005263.2 + 37693 0.66 0.622599
Target:  5'- --gGCGUuCGUugaaCGCGcGCCGgacccgcUCGCCGGc -3'
miRNA:   3'- caaUGCAuGCA----GCGC-CGGC-------AGCGGCC- -5'
24174 5' -56.7 NC_005263.2 + 26050 0.67 0.61288
Target:  5'- ---cCGggauCGUCGCGGCaacaGCCGGg -3'
miRNA:   3'- caauGCau--GCAGCGCCGgcagCGGCC- -5'
24174 5' -56.7 NC_005263.2 + 29517 0.67 0.61288
Target:  5'- --gGCGUcCGUCgGCGcGCCagcaGUgGCCGGg -3'
miRNA:   3'- caaUGCAuGCAG-CGC-CGG----CAgCGGCC- -5'
24174 5' -56.7 NC_005263.2 + 15787 0.67 0.602097
Target:  5'- ----aGUGCGUCGC--CCGUCGUCGa -3'
miRNA:   3'- caaugCAUGCAGCGccGGCAGCGGCc -5'
24174 5' -56.7 NC_005263.2 + 12531 0.67 0.602097
Target:  5'- --gGCGUucgcauucACGUUcgcgGCGGCCGgcggCGCCGu -3'
miRNA:   3'- caaUGCA--------UGCAG----CGCCGGCa---GCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.