miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24175 3' -57 NC_005263.2 + 24935 0.66 0.572652
Target:  5'- cGUUCgGUGGCGGCggaCGGCGGuGCGCg-- -3'
miRNA:   3'- -CAAG-CGCUGCCG---GCCGUUcUGCGaua -5'
24175 3' -57 NC_005263.2 + 20411 0.66 0.572652
Target:  5'- --aUGCGGCcGCCGGCGccGGCGCg-- -3'
miRNA:   3'- caaGCGCUGcCGGCCGUu-CUGCGaua -5'
24175 3' -57 NC_005263.2 + 17318 0.66 0.561717
Target:  5'- --gCGCGAauuCGGcCCGGCGccGGugGCUu- -3'
miRNA:   3'- caaGCGCU---GCC-GGCCGU--UCugCGAua -5'
24175 3' -57 NC_005263.2 + 2694 0.66 0.561717
Target:  5'- -aUCGCG-CGGCCgcucGGCAGGugcauGCGCa-- -3'
miRNA:   3'- caAGCGCuGCCGG----CCGUUC-----UGCGaua -5'
24175 3' -57 NC_005263.2 + 33437 0.66 0.561717
Target:  5'- --gCGCGuaGCGGUCGGCcacGAG-CGCUGg -3'
miRNA:   3'- caaGCGC--UGCCGGCCG---UUCuGCGAUa -5'
24175 3' -57 NC_005263.2 + 37721 0.66 0.561717
Target:  5'- -cUCGC--CGGCCGGCccGGCGCg-- -3'
miRNA:   3'- caAGCGcuGCCGGCCGuuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 43243 0.66 0.55084
Target:  5'- ---aGCGGCGGCagcggcauCGGCAcGGCGCg-- -3'
miRNA:   3'- caagCGCUGCCG--------GCCGUuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 10389 0.66 0.55084
Target:  5'- --aCGCGccgggcCGGCCGGCGAGcggguccgGCGCg-- -3'
miRNA:   3'- caaGCGCu-----GCCGGCCGUUC--------UGCGaua -5'
24175 3' -57 NC_005263.2 + 30239 0.66 0.544344
Target:  5'- cGUUCGCGGCGaaGCgugcgcgguagucguCGGCGAaGCGCUGc -3'
miRNA:   3'- -CAAGCGCUGC--CG---------------GCCGUUcUGCGAUa -5'
24175 3' -57 NC_005263.2 + 7212 0.66 0.540028
Target:  5'- --gCGCGACcaucGCCGGCGaccagaAGGCGCg-- -3'
miRNA:   3'- caaGCGCUGc---CGGCCGU------UCUGCGaua -5'
24175 3' -57 NC_005263.2 + 37717 0.66 0.529288
Target:  5'- --cCGCuACGuGCCGGUcaugcgcucggGAGACGCUGa -3'
miRNA:   3'- caaGCGcUGC-CGGCCG-----------UUCUGCGAUa -5'
24175 3' -57 NC_005263.2 + 46097 0.67 0.512273
Target:  5'- --cCGUGACGucggguaucauccgcGCCGGCGuGACGCUu- -3'
miRNA:   3'- caaGCGCUGC---------------CGGCCGUuCUGCGAua -5'
24175 3' -57 NC_005263.2 + 43211 0.67 0.508054
Target:  5'- ---aGCGACuGCCGaaccuCAAGACGCUGUu -3'
miRNA:   3'- caagCGCUGcCGGCc----GUUCUGCGAUA- -5'
24175 3' -57 NC_005263.2 + 650 0.67 0.508054
Target:  5'- --aCGCGACGuGCCGGCcAGAucgaaCGCc-- -3'
miRNA:   3'- caaGCGCUGC-CGGCCGuUCU-----GCGaua -5'
24175 3' -57 NC_005263.2 + 47312 0.67 0.497573
Target:  5'- --gCGcCGGCGGCCGGC---ACGCUc- -3'
miRNA:   3'- caaGC-GCUGCCGGCCGuucUGCGAua -5'
24175 3' -57 NC_005263.2 + 16408 0.67 0.497573
Target:  5'- -aUCGCGgguGCGGUacuCGGCGucGGCGCUGg -3'
miRNA:   3'- caAGCGC---UGCCG---GCCGUu-CUGCGAUa -5'
24175 3' -57 NC_005263.2 + 15678 0.67 0.497573
Target:  5'- cUUgGCGugccaagaGCGGCCGGCGAGcuCGCa-- -3'
miRNA:   3'- cAAgCGC--------UGCCGGCCGUUCu-GCGaua -5'
24175 3' -57 NC_005263.2 + 33964 0.67 0.497573
Target:  5'- -gUCGCcaaGGCGGCCGcGCuGGcCGCUGc -3'
miRNA:   3'- caAGCG---CUGCCGGC-CGuUCuGCGAUa -5'
24175 3' -57 NC_005263.2 + 19032 0.67 0.487189
Target:  5'- ---aGCGACGGCCGauGCGcgccgccccgaGGACGCg-- -3'
miRNA:   3'- caagCGCUGCCGGC--CGU-----------UCUGCGaua -5'
24175 3' -57 NC_005263.2 + 29003 0.67 0.487189
Target:  5'- -aUCGCGAgcaauucgacauCGGCCagcccuGCAAGACGCa-- -3'
miRNA:   3'- caAGCGCU------------GCCGGc-----CGUUCUGCGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.