Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24175 | 3' | -57 | NC_005263.2 | + | 17160 | 0.7 | 0.329601 |
Target: 5'- -gUCGCGGuguuCGGCUGGCAgacgauugcgaAGGCGCUc- -3' miRNA: 3'- caAGCGCU----GCCGGCCGU-----------UCUGCGAua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 22534 | 0.7 | 0.321586 |
Target: 5'- --gCGUGACGGgCGGCGcGGACGCc-- -3' miRNA: 3'- caaGCGCUGCCgGCCGU-UCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 44164 | 0.71 | 0.276571 |
Target: 5'- -cUCGCuGGCuGGCgCGuGCGAGGCGCUAg -3' miRNA: 3'- caAGCG-CUG-CCG-GC-CGUUCUGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 47241 | 0.71 | 0.298422 |
Target: 5'- ---aGCGcCGGCCGGCAcgacgGGuACGCUGUc -3' miRNA: 3'- caagCGCuGCCGGCCGU-----UC-UGCGAUA- -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 39286 | 0.71 | 0.298422 |
Target: 5'- -aUCGCacgccgaGCGGCCGGCA-GGCGCa-- -3' miRNA: 3'- caAGCGc------UGCCGGCCGUuCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 38218 | 0.71 | 0.305997 |
Target: 5'- -cUCGCGAUGGCCGcCGAGAaGCUc- -3' miRNA: 3'- caAGCGCUGCCGGCcGUUCUgCGAua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 18682 | 0.72 | 0.243021 |
Target: 5'- cGUUCGCGcagcaagcuaGCGGCgCGGCA-GGCGCg-- -3' miRNA: 3'- -CAAGCGC----------UGCCG-GCCGUuCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 44431 | 0.73 | 0.224562 |
Target: 5'- --aCGCGACGGCCGGCAcugucucGAacgaGCUGc -3' miRNA: 3'- caaGCGCUGCCGGCCGUu------CUg---CGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 27383 | 0.74 | 0.191209 |
Target: 5'- ---gGCGGCGGCCGGC---GCGCUGa -3' miRNA: 3'- caagCGCUGCCGGCCGuucUGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 22134 | 0.75 | 0.149349 |
Target: 5'- --gCGCGAUcGCCGGaCGGGGCGCUGUg -3' miRNA: 3'- caaGCGCUGcCGGCC-GUUCUGCGAUA- -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 31617 | 0.75 | 0.166815 |
Target: 5'- -gUCGCGACGGCCGcGC--GGCGCa-- -3' miRNA: 3'- caAGCGCUGCCGGC-CGuuCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 14262 | 0.77 | 0.112748 |
Target: 5'- -cUUGCGGCGGCCGGCGcaACGCg-- -3' miRNA: 3'- caAGCGCUGCCGGCCGUucUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 12545 | 0.83 | 0.043239 |
Target: 5'- cGUUCGCGGCGGCCGGC--GGCGCc-- -3' miRNA: 3'- -CAAGCGCUGCCGGCCGuuCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 21866 | 1.05 | 0.000958 |
Target: 5'- cGUUCGCGACGGCCGGCAAGACGCUAUc -3' miRNA: 3'- -CAAGCGCUGCCGGCCGUUCUGCGAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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