miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24175 3' -57 NC_005263.2 + 19032 0.67 0.487189
Target:  5'- ---aGCGACGGCCGauGCGcgccgccccgaGGACGCg-- -3'
miRNA:   3'- caagCGCUGCCGGC--CGU-----------UCUGCGaua -5'
24175 3' -57 NC_005263.2 + 37970 0.67 0.476909
Target:  5'- --cCGCGcCGGCUGGCGcugaaGGugGCg-- -3'
miRNA:   3'- caaGCGCuGCCGGCCGU-----UCugCGaua -5'
24175 3' -57 NC_005263.2 + 15201 0.67 0.466738
Target:  5'- --gCGCGAC-GUCGGCAAG-CGCUu- -3'
miRNA:   3'- caaGCGCUGcCGGCCGUUCuGCGAua -5'
24175 3' -57 NC_005263.2 + 35934 0.67 0.466738
Target:  5'- -aUCGCGAcaCGGCCG-CGAucguuGACGCUGc -3'
miRNA:   3'- caAGCGCU--GCCGGCcGUU-----CUGCGAUa -5'
24175 3' -57 NC_005263.2 + 26521 0.68 0.45668
Target:  5'- --gCGCGGCGucgacGCCGGCGGcgagcacgcGGCGCUGg -3'
miRNA:   3'- caaGCGCUGC-----CGGCCGUU---------CUGCGAUa -5'
24175 3' -57 NC_005263.2 + 44322 0.68 0.45668
Target:  5'- --aCGCGAUGGUCGGCGuGugGgaGa -3'
miRNA:   3'- caaGCGCUGCCGGCCGUuCugCgaUa -5'
24175 3' -57 NC_005263.2 + 18622 0.68 0.446739
Target:  5'- cGUUCGCGGCaGgUGGCAacccGGGCGCc-- -3'
miRNA:   3'- -CAAGCGCUGcCgGCCGU----UCUGCGaua -5'
24175 3' -57 NC_005263.2 + 35541 0.68 0.446739
Target:  5'- ---gGCGGCGcGCgGGCG-GGCGCUAc -3'
miRNA:   3'- caagCGCUGC-CGgCCGUuCUGCGAUa -5'
24175 3' -57 NC_005263.2 + 26199 0.68 0.446739
Target:  5'- --gCGCGGCGGCCGcGC--GAUGCg-- -3'
miRNA:   3'- caaGCGCUGCCGGC-CGuuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 27525 0.68 0.446739
Target:  5'- -gUCGCGgugcccgucggcACGGCCGGCAGGcCGg--- -3'
miRNA:   3'- caAGCGC------------UGCCGGCCGUUCuGCgaua -5'
24175 3' -57 NC_005263.2 + 30637 0.68 0.446739
Target:  5'- --cUGCGcCGGCCGGCGuuGACGUc-- -3'
miRNA:   3'- caaGCGCuGCCGGCCGUu-CUGCGaua -5'
24175 3' -57 NC_005263.2 + 44773 0.68 0.417661
Target:  5'- --gCGCGGC-GCCGGCGgcgcgcAGACGUUGa -3'
miRNA:   3'- caaGCGCUGcCGGCCGU------UCUGCGAUa -5'
24175 3' -57 NC_005263.2 + 39013 0.69 0.396166
Target:  5'- uGUUCGUGAacCGGCCgaucgacccgaacuGGCAcgucgAGGCGCUAc -3'
miRNA:   3'- -CAAGCGCU--GCCGG--------------CCGU-----UCUGCGAUa -5'
24175 3' -57 NC_005263.2 + 9277 0.69 0.393415
Target:  5'- uUUCGCGACGGCCcaugccggacauuucGGCAAGcucaGCg-- -3'
miRNA:   3'- cAAGCGCUGCCGG---------------CCGUUCug--CGaua -5'
24175 3' -57 NC_005263.2 + 10867 0.69 0.380743
Target:  5'- -gUCGCGGCGGaacuCGGCAccGGCGCg-- -3'
miRNA:   3'- caAGCGCUGCCg---GCCGUu-CUGCGaua -5'
24175 3' -57 NC_005263.2 + 44577 0.69 0.363119
Target:  5'- --aCGaCGcCGGCC-GCGAGACGCUGa -3'
miRNA:   3'- caaGC-GCuGCCGGcCGUUCUGCGAUa -5'
24175 3' -57 NC_005263.2 + 16570 0.7 0.354522
Target:  5'- ---aGCGACgccaaGGCCGGCGGcGACGCg-- -3'
miRNA:   3'- caagCGCUG-----CCGGCCGUU-CUGCGaua -5'
24175 3' -57 NC_005263.2 + 17160 0.7 0.329601
Target:  5'- -gUCGCGGuguuCGGCUGGCAgacgauugcgaAGGCGCUc- -3'
miRNA:   3'- caAGCGCU----GCCGGCCGU-----------UCUGCGAua -5'
24175 3' -57 NC_005263.2 + 22534 0.7 0.321586
Target:  5'- --gCGUGACGGgCGGCGcGGACGCc-- -3'
miRNA:   3'- caaGCGCUGCCgGCCGU-UCUGCGaua -5'
24175 3' -57 NC_005263.2 + 47417 0.7 0.321586
Target:  5'- aGUUCauCGGCGcGCuCGGCAAGGCGCg-- -3'
miRNA:   3'- -CAAGc-GCUGC-CG-GCCGUUCUGCGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.