miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24175 3' -57 NC_005263.2 + 650 0.67 0.508054
Target:  5'- --aCGCGACGuGCCGGCcAGAucgaaCGCc-- -3'
miRNA:   3'- caaGCGCUGC-CGGCCGuUCU-----GCGaua -5'
24175 3' -57 NC_005263.2 + 2694 0.66 0.561717
Target:  5'- -aUCGCG-CGGCCgcucGGCAGGugcauGCGCa-- -3'
miRNA:   3'- caAGCGCuGCCGG----CCGUUC-----UGCGaua -5'
24175 3' -57 NC_005263.2 + 7212 0.66 0.540028
Target:  5'- --gCGCGACcaucGCCGGCGaccagaAGGCGCg-- -3'
miRNA:   3'- caaGCGCUGc---CGGCCGU------UCUGCGaua -5'
24175 3' -57 NC_005263.2 + 9277 0.69 0.393415
Target:  5'- uUUCGCGACGGCCcaugccggacauuucGGCAAGcucaGCg-- -3'
miRNA:   3'- cAAGCGCUGCCGG---------------CCGUUCug--CGaua -5'
24175 3' -57 NC_005263.2 + 10389 0.66 0.55084
Target:  5'- --aCGCGccgggcCGGCCGGCGAGcggguccgGCGCg-- -3'
miRNA:   3'- caaGCGCu-----GCCGGCCGUUC--------UGCGaua -5'
24175 3' -57 NC_005263.2 + 10867 0.69 0.380743
Target:  5'- -gUCGCGGCGGaacuCGGCAccGGCGCg-- -3'
miRNA:   3'- caAGCGCUGCCg---GCCGUu-CUGCGaua -5'
24175 3' -57 NC_005263.2 + 12545 0.83 0.043239
Target:  5'- cGUUCGCGGCGGCCGGC--GGCGCc-- -3'
miRNA:   3'- -CAAGCGCUGCCGGCCGuuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 14262 0.77 0.112748
Target:  5'- -cUUGCGGCGGCCGGCGcaACGCg-- -3'
miRNA:   3'- caAGCGCUGCCGGCCGUucUGCGaua -5'
24175 3' -57 NC_005263.2 + 15201 0.67 0.466738
Target:  5'- --gCGCGAC-GUCGGCAAG-CGCUu- -3'
miRNA:   3'- caaGCGCUGcCGGCCGUUCuGCGAua -5'
24175 3' -57 NC_005263.2 + 15678 0.67 0.497573
Target:  5'- cUUgGCGugccaagaGCGGCCGGCGAGcuCGCa-- -3'
miRNA:   3'- cAAgCGC--------UGCCGGCCGUUCu-GCGaua -5'
24175 3' -57 NC_005263.2 + 16408 0.67 0.497573
Target:  5'- -aUCGCGgguGCGGUacuCGGCGucGGCGCUGg -3'
miRNA:   3'- caAGCGC---UGCCG---GCCGUu-CUGCGAUa -5'
24175 3' -57 NC_005263.2 + 16570 0.7 0.354522
Target:  5'- ---aGCGACgccaaGGCCGGCGGcGACGCg-- -3'
miRNA:   3'- caagCGCUG-----CCGGCCGUU-CUGCGaua -5'
24175 3' -57 NC_005263.2 + 17160 0.7 0.329601
Target:  5'- -gUCGCGGuguuCGGCUGGCAgacgauugcgaAGGCGCUc- -3'
miRNA:   3'- caAGCGCU----GCCGGCCGU-----------UCUGCGAua -5'
24175 3' -57 NC_005263.2 + 17318 0.66 0.561717
Target:  5'- --gCGCGAauuCGGcCCGGCGccGGugGCUu- -3'
miRNA:   3'- caaGCGCU---GCC-GGCCGU--UCugCGAua -5'
24175 3' -57 NC_005263.2 + 18622 0.68 0.446739
Target:  5'- cGUUCGCGGCaGgUGGCAacccGGGCGCc-- -3'
miRNA:   3'- -CAAGCGCUGcCgGCCGU----UCUGCGaua -5'
24175 3' -57 NC_005263.2 + 18682 0.72 0.243021
Target:  5'- cGUUCGCGcagcaagcuaGCGGCgCGGCA-GGCGCg-- -3'
miRNA:   3'- -CAAGCGC----------UGCCG-GCCGUuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 19032 0.67 0.487189
Target:  5'- ---aGCGACGGCCGauGCGcgccgccccgaGGACGCg-- -3'
miRNA:   3'- caagCGCUGCCGGC--CGU-----------UCUGCGaua -5'
24175 3' -57 NC_005263.2 + 20411 0.66 0.572652
Target:  5'- --aUGCGGCcGCCGGCGccGGCGCg-- -3'
miRNA:   3'- caaGCGCUGcCGGCCGUu-CUGCGaua -5'
24175 3' -57 NC_005263.2 + 21866 1.05 0.000958
Target:  5'- cGUUCGCGACGGCCGGCAAGACGCUAUc -3'
miRNA:   3'- -CAAGCGCUGCCGGCCGUUCUGCGAUA- -5'
24175 3' -57 NC_005263.2 + 21896 0.67 0.487189
Target:  5'- uUUCGCGaACGGCCGccGCAucGCGCg-- -3'
miRNA:   3'- cAAGCGC-UGCCGGC--CGUucUGCGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.