Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24175 | 3' | -57 | NC_005263.2 | + | 39013 | 0.69 | 0.396166 |
Target: 5'- uGUUCGUGAacCGGCCgaucgacccgaacuGGCAcgucgAGGCGCUAc -3' miRNA: 3'- -CAAGCGCU--GCCGG--------------CCGU-----UCUGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 39286 | 0.71 | 0.298422 |
Target: 5'- -aUCGCacgccgaGCGGCCGGCA-GGCGCa-- -3' miRNA: 3'- caAGCGc------UGCCGGCCGUuCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 43211 | 0.67 | 0.508054 |
Target: 5'- ---aGCGACuGCCGaaccuCAAGACGCUGUu -3' miRNA: 3'- caagCGCUGcCGGCc----GUUCUGCGAUA- -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 43243 | 0.66 | 0.55084 |
Target: 5'- ---aGCGGCGGCagcggcauCGGCAcGGCGCg-- -3' miRNA: 3'- caagCGCUGCCG--------GCCGUuCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 44164 | 0.71 | 0.276571 |
Target: 5'- -cUCGCuGGCuGGCgCGuGCGAGGCGCUAg -3' miRNA: 3'- caAGCG-CUG-CCG-GC-CGUUCUGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 44322 | 0.68 | 0.45668 |
Target: 5'- --aCGCGAUGGUCGGCGuGugGgaGa -3' miRNA: 3'- caaGCGCUGCCGGCCGUuCugCgaUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 44431 | 0.73 | 0.224562 |
Target: 5'- --aCGCGACGGCCGGCAcugucucGAacgaGCUGc -3' miRNA: 3'- caaGCGCUGCCGGCCGUu------CUg---CGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 44577 | 0.69 | 0.363119 |
Target: 5'- --aCGaCGcCGGCC-GCGAGACGCUGa -3' miRNA: 3'- caaGC-GCuGCCGGcCGUUCUGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 44773 | 0.68 | 0.417661 |
Target: 5'- --gCGCGGC-GCCGGCGgcgcgcAGACGUUGa -3' miRNA: 3'- caaGCGCUGcCGGCCGU------UCUGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 45107 | 0.7 | 0.313718 |
Target: 5'- -gUCGCGGCGgaugcGCCGGCGAG-CGuCUAc -3' miRNA: 3'- caAGCGCUGC-----CGGCCGUUCuGC-GAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 46097 | 0.67 | 0.512273 |
Target: 5'- --cCGUGACGucggguaucauccgcGCCGGCGuGACGCUu- -3' miRNA: 3'- caaGCGCUGC---------------CGGCCGUuCUGCGAua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 47241 | 0.71 | 0.298422 |
Target: 5'- ---aGCGcCGGCCGGCAcgacgGGuACGCUGUc -3' miRNA: 3'- caagCGCuGCCGGCCGU-----UC-UGCGAUA- -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 47312 | 0.67 | 0.497573 |
Target: 5'- --gCGcCGGCGGCCGGC---ACGCUc- -3' miRNA: 3'- caaGC-GCUGCCGGCCGuucUGCGAua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 47417 | 0.7 | 0.321586 |
Target: 5'- aGUUCauCGGCGcGCuCGGCAAGGCGCg-- -3' miRNA: 3'- -CAAGc-GCUGC-CG-GCCGUUCUGCGaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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