miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24175 3' -57 NC_005263.2 + 33964 0.67 0.497573
Target:  5'- -gUCGCcaaGGCGGCCGcGCuGGcCGCUGc -3'
miRNA:   3'- caAGCG---CUGCCGGC-CGuUCuGCGAUa -5'
24175 3' -57 NC_005263.2 + 33437 0.66 0.561717
Target:  5'- --gCGCGuaGCGGUCGGCcacGAG-CGCUGg -3'
miRNA:   3'- caaGCGC--UGCCGGCCG---UUCuGCGAUa -5'
24175 3' -57 NC_005263.2 + 31617 0.75 0.166815
Target:  5'- -gUCGCGACGGCCGcGC--GGCGCa-- -3'
miRNA:   3'- caAGCGCUGCCGGC-CGuuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 30637 0.68 0.446739
Target:  5'- --cUGCGcCGGCCGGCGuuGACGUc-- -3'
miRNA:   3'- caaGCGCuGCCGGCCGUu-CUGCGaua -5'
24175 3' -57 NC_005263.2 + 30239 0.66 0.544344
Target:  5'- cGUUCGCGGCGaaGCgugcgcgguagucguCGGCGAaGCGCUGc -3'
miRNA:   3'- -CAAGCGCUGC--CG---------------GCCGUUcUGCGAUa -5'
24175 3' -57 NC_005263.2 + 29003 0.67 0.487189
Target:  5'- -aUCGCGAgcaauucgacauCGGCCagcccuGCAAGACGCa-- -3'
miRNA:   3'- caAGCGCU------------GCCGGc-----CGUUCUGCGaua -5'
24175 3' -57 NC_005263.2 + 27525 0.68 0.446739
Target:  5'- -gUCGCGgugcccgucggcACGGCCGGCAGGcCGg--- -3'
miRNA:   3'- caAGCGC------------UGCCGGCCGUUCuGCgaua -5'
24175 3' -57 NC_005263.2 + 27383 0.74 0.191209
Target:  5'- ---gGCGGCGGCCGGC---GCGCUGa -3'
miRNA:   3'- caagCGCUGCCGGCCGuucUGCGAUa -5'
24175 3' -57 NC_005263.2 + 26521 0.68 0.45668
Target:  5'- --gCGCGGCGucgacGCCGGCGGcgagcacgcGGCGCUGg -3'
miRNA:   3'- caaGCGCUGC-----CGGCCGUU---------CUGCGAUa -5'
24175 3' -57 NC_005263.2 + 26199 0.68 0.446739
Target:  5'- --gCGCGGCGGCCGcGC--GAUGCg-- -3'
miRNA:   3'- caaGCGCUGCCGGC-CGuuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 24935 0.66 0.572652
Target:  5'- cGUUCgGUGGCGGCggaCGGCGGuGCGCg-- -3'
miRNA:   3'- -CAAG-CGCUGCCG---GCCGUUcUGCGaua -5'
24175 3' -57 NC_005263.2 + 22534 0.7 0.321586
Target:  5'- --gCGUGACGGgCGGCGcGGACGCc-- -3'
miRNA:   3'- caaGCGCUGCCgGCCGU-UCUGCGaua -5'
24175 3' -57 NC_005263.2 + 22497 0.7 0.313718
Target:  5'- ---gGCGGCGGCCGGCGGcgguucGGCgGCUGc -3'
miRNA:   3'- caagCGCUGCCGGCCGUU------CUG-CGAUa -5'
24175 3' -57 NC_005263.2 + 22134 0.75 0.149349
Target:  5'- --gCGCGAUcGCCGGaCGGGGCGCUGUg -3'
miRNA:   3'- caaGCGCUGcCGGCC-GUUCUGCGAUA- -5'
24175 3' -57 NC_005263.2 + 21896 0.67 0.487189
Target:  5'- uUUCGCGaACGGCCGccGCAucGCGCg-- -3'
miRNA:   3'- cAAGCGC-UGCCGGC--CGUucUGCGaua -5'
24175 3' -57 NC_005263.2 + 21866 1.05 0.000958
Target:  5'- cGUUCGCGACGGCCGGCAAGACGCUAUc -3'
miRNA:   3'- -CAAGCGCUGCCGGCCGUUCUGCGAUA- -5'
24175 3' -57 NC_005263.2 + 20411 0.66 0.572652
Target:  5'- --aUGCGGCcGCCGGCGccGGCGCg-- -3'
miRNA:   3'- caaGCGCUGcCGGCCGUu-CUGCGaua -5'
24175 3' -57 NC_005263.2 + 19032 0.67 0.487189
Target:  5'- ---aGCGACGGCCGauGCGcgccgccccgaGGACGCg-- -3'
miRNA:   3'- caagCGCUGCCGGC--CGU-----------UCUGCGaua -5'
24175 3' -57 NC_005263.2 + 18682 0.72 0.243021
Target:  5'- cGUUCGCGcagcaagcuaGCGGCgCGGCA-GGCGCg-- -3'
miRNA:   3'- -CAAGCGC----------UGCCG-GCCGUuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 18622 0.68 0.446739
Target:  5'- cGUUCGCGGCaGgUGGCAacccGGGCGCc-- -3'
miRNA:   3'- -CAAGCGCUGcCgGCCGU----UCUGCGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.