Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24175 | 3' | -57 | NC_005263.2 | + | 17318 | 0.66 | 0.561717 |
Target: 5'- --gCGCGAauuCGGcCCGGCGccGGugGCUu- -3' miRNA: 3'- caaGCGCU---GCC-GGCCGU--UCugCGAua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 17160 | 0.7 | 0.329601 |
Target: 5'- -gUCGCGGuguuCGGCUGGCAgacgauugcgaAGGCGCUc- -3' miRNA: 3'- caAGCGCU----GCCGGCCGU-----------UCUGCGAua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 16570 | 0.7 | 0.354522 |
Target: 5'- ---aGCGACgccaaGGCCGGCGGcGACGCg-- -3' miRNA: 3'- caagCGCUG-----CCGGCCGUU-CUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 16408 | 0.67 | 0.497573 |
Target: 5'- -aUCGCGgguGCGGUacuCGGCGucGGCGCUGg -3' miRNA: 3'- caAGCGC---UGCCG---GCCGUu-CUGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 15678 | 0.67 | 0.497573 |
Target: 5'- cUUgGCGugccaagaGCGGCCGGCGAGcuCGCa-- -3' miRNA: 3'- cAAgCGC--------UGCCGGCCGUUCu-GCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 15201 | 0.67 | 0.466738 |
Target: 5'- --gCGCGAC-GUCGGCAAG-CGCUu- -3' miRNA: 3'- caaGCGCUGcCGGCCGUUCuGCGAua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 14262 | 0.77 | 0.112748 |
Target: 5'- -cUUGCGGCGGCCGGCGcaACGCg-- -3' miRNA: 3'- caAGCGCUGCCGGCCGUucUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 12545 | 0.83 | 0.043239 |
Target: 5'- cGUUCGCGGCGGCCGGC--GGCGCc-- -3' miRNA: 3'- -CAAGCGCUGCCGGCCGuuCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 10867 | 0.69 | 0.380743 |
Target: 5'- -gUCGCGGCGGaacuCGGCAccGGCGCg-- -3' miRNA: 3'- caAGCGCUGCCg---GCCGUu-CUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 10389 | 0.66 | 0.55084 |
Target: 5'- --aCGCGccgggcCGGCCGGCGAGcggguccgGCGCg-- -3' miRNA: 3'- caaGCGCu-----GCCGGCCGUUC--------UGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 9277 | 0.69 | 0.393415 |
Target: 5'- uUUCGCGACGGCCcaugccggacauuucGGCAAGcucaGCg-- -3' miRNA: 3'- cAAGCGCUGCCGG---------------CCGUUCug--CGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 7212 | 0.66 | 0.540028 |
Target: 5'- --gCGCGACcaucGCCGGCGaccagaAGGCGCg-- -3' miRNA: 3'- caaGCGCUGc---CGGCCGU------UCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 2694 | 0.66 | 0.561717 |
Target: 5'- -aUCGCG-CGGCCgcucGGCAGGugcauGCGCa-- -3' miRNA: 3'- caAGCGCuGCCGG----CCGUUC-----UGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 650 | 0.67 | 0.508054 |
Target: 5'- --aCGCGACGuGCCGGCcAGAucgaaCGCc-- -3' miRNA: 3'- caaGCGCUGC-CGGCCGuUCU-----GCGaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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