Results 41 - 54 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24175 | 3' | -57 | NC_005263.2 | + | 37970 | 0.67 | 0.476909 |
Target: 5'- --cCGCGcCGGCUGGCGcugaaGGugGCg-- -3' miRNA: 3'- caaGCGCuGCCGGCCGU-----UCugCGaua -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 35934 | 0.67 | 0.466738 |
Target: 5'- -aUCGCGAcaCGGCCG-CGAucguuGACGCUGc -3' miRNA: 3'- caAGCGCU--GCCGGCcGUU-----CUGCGAUa -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 44431 | 0.73 | 0.224562 |
Target: 5'- --aCGCGACGGCCGGCAcugucucGAacgaGCUGc -3' miRNA: 3'- caaGCGCUGCCGGCCGUu------CUg---CGAUa -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 45107 | 0.7 | 0.313718 |
Target: 5'- -gUCGCGGCGgaugcGCCGGCGAG-CGuCUAc -3' miRNA: 3'- caAGCGCUGC-----CGGCCGUUCuGC-GAUa -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 22534 | 0.7 | 0.321586 |
Target: 5'- --gCGUGACGGgCGGCGcGGACGCc-- -3' miRNA: 3'- caaGCGCUGCCgGCCGU-UCUGCGaua -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 17160 | 0.7 | 0.329601 |
Target: 5'- -gUCGCGGuguuCGGCUGGCAgacgauugcgaAGGCGCUc- -3' miRNA: 3'- caAGCGCU----GCCGGCCGU-----------UCUGCGAua -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 16570 | 0.7 | 0.354522 |
Target: 5'- ---aGCGACgccaaGGCCGGCGGcGACGCg-- -3' miRNA: 3'- caagCGCUG-----CCGGCCGUU-CUGCGaua -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 9277 | 0.69 | 0.393415 |
Target: 5'- uUUCGCGACGGCCcaugccggacauuucGGCAAGcucaGCg-- -3' miRNA: 3'- cAAGCGCUGCCGG---------------CCGUUCug--CGaua -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 35541 | 0.68 | 0.446739 |
Target: 5'- ---gGCGGCGcGCgGGCG-GGCGCUAc -3' miRNA: 3'- caagCGCUGC-CGgCCGUuCUGCGAUa -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 26199 | 0.68 | 0.446739 |
Target: 5'- --gCGCGGCGGCCGcGC--GAUGCg-- -3' miRNA: 3'- caaGCGCUGCCGGC-CGuuCUGCGaua -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 27525 | 0.68 | 0.446739 |
Target: 5'- -gUCGCGgugcccgucggcACGGCCGGCAGGcCGg--- -3' miRNA: 3'- caAGCGC------------UGCCGGCCGUUCuGCgaua -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 30637 | 0.68 | 0.446739 |
Target: 5'- --cUGCGcCGGCCGGCGuuGACGUc-- -3' miRNA: 3'- caaGCGCuGCCGGCCGUu-CUGCGaua -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 15201 | 0.67 | 0.466738 |
Target: 5'- --gCGCGAC-GUCGGCAAG-CGCUu- -3' miRNA: 3'- caaGCGCUGcCGGCCGUUCuGCGAua -5' |
|||||||
24175 | 3' | -57 | NC_005263.2 | + | 24935 | 0.66 | 0.572652 |
Target: 5'- cGUUCgGUGGCGGCggaCGGCGGuGCGCg-- -3' miRNA: 3'- -CAAG-CGCUGCCG---GCCGUUcUGCGaua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home