Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24175 | 3' | -57 | NC_005263.2 | + | 9277 | 0.69 | 0.393415 |
Target: 5'- uUUCGCGACGGCCcaugccggacauuucGGCAAGcucaGCg-- -3' miRNA: 3'- cAAGCGCUGCCGG---------------CCGUUCug--CGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 19032 | 0.67 | 0.487189 |
Target: 5'- ---aGCGACGGCCGauGCGcgccgccccgaGGACGCg-- -3' miRNA: 3'- caagCGCUGCCGGC--CGU-----------UCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 37970 | 0.67 | 0.476909 |
Target: 5'- --cCGCGcCGGCUGGCGcugaaGGugGCg-- -3' miRNA: 3'- caaGCGCuGCCGGCCGU-----UCugCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 35934 | 0.67 | 0.466738 |
Target: 5'- -aUCGCGAcaCGGCCG-CGAucguuGACGCUGc -3' miRNA: 3'- caAGCGCU--GCCGGCcGUU-----CUGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 15201 | 0.67 | 0.466738 |
Target: 5'- --gCGCGAC-GUCGGCAAG-CGCUu- -3' miRNA: 3'- caaGCGCUGcCGGCCGUUCuGCGAua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 30637 | 0.68 | 0.446739 |
Target: 5'- --cUGCGcCGGCCGGCGuuGACGUc-- -3' miRNA: 3'- caaGCGCuGCCGGCCGUu-CUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 27525 | 0.68 | 0.446739 |
Target: 5'- -gUCGCGgugcccgucggcACGGCCGGCAGGcCGg--- -3' miRNA: 3'- caAGCGC------------UGCCGGCCGUUCuGCgaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 26199 | 0.68 | 0.446739 |
Target: 5'- --gCGCGGCGGCCGcGC--GAUGCg-- -3' miRNA: 3'- caaGCGCUGCCGGC-CGuuCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 35541 | 0.68 | 0.446739 |
Target: 5'- ---gGCGGCGcGCgGGCG-GGCGCUAc -3' miRNA: 3'- caagCGCUGC-CGgCCGUuCUGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 47312 | 0.67 | 0.497573 |
Target: 5'- --gCGcCGGCGGCCGGC---ACGCUc- -3' miRNA: 3'- caaGC-GCUGCCGGCCGuucUGCGAua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 33964 | 0.67 | 0.497573 |
Target: 5'- -gUCGCcaaGGCGGCCGcGCuGGcCGCUGc -3' miRNA: 3'- caAGCG---CUGCCGGC-CGuUCuGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 16408 | 0.67 | 0.497573 |
Target: 5'- -aUCGCGgguGCGGUacuCGGCGucGGCGCUGg -3' miRNA: 3'- caAGCGC---UGCCG---GCCGUu-CUGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 2694 | 0.66 | 0.561717 |
Target: 5'- -aUCGCG-CGGCCgcucGGCAGGugcauGCGCa-- -3' miRNA: 3'- caAGCGCuGCCGG----CCGUUC-----UGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 17318 | 0.66 | 0.561717 |
Target: 5'- --gCGCGAauuCGGcCCGGCGccGGugGCUu- -3' miRNA: 3'- caaGCGCU---GCC-GGCCGU--UCugCGAua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 43243 | 0.66 | 0.55084 |
Target: 5'- ---aGCGGCGGCagcggcauCGGCAcGGCGCg-- -3' miRNA: 3'- caagCGCUGCCG--------GCCGUuCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 10389 | 0.66 | 0.55084 |
Target: 5'- --aCGCGccgggcCGGCCGGCGAGcggguccgGCGCg-- -3' miRNA: 3'- caaGCGCu-----GCCGGCCGUUC--------UGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 7212 | 0.66 | 0.540028 |
Target: 5'- --gCGCGACcaucGCCGGCGaccagaAGGCGCg-- -3' miRNA: 3'- caaGCGCUGc---CGGCCGU------UCUGCGaua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 37717 | 0.66 | 0.529288 |
Target: 5'- --cCGCuACGuGCCGGUcaugcgcucggGAGACGCUGa -3' miRNA: 3'- caaGCGcUGC-CGGCCG-----------UUCUGCGAUa -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 46097 | 0.67 | 0.512273 |
Target: 5'- --cCGUGACGucggguaucauccgcGCCGGCGuGACGCUu- -3' miRNA: 3'- caaGCGCUGC---------------CGGCCGUuCUGCGAua -5' |
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24175 | 3' | -57 | NC_005263.2 | + | 650 | 0.67 | 0.508054 |
Target: 5'- --aCGCGACGuGCCGGCcAGAucgaaCGCc-- -3' miRNA: 3'- caaGCGCUGC-CGGCCGuUCU-----GCGaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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