miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24175 3' -57 NC_005263.2 + 37721 0.66 0.561717
Target:  5'- -cUCGC--CGGCCGGCccGGCGCg-- -3'
miRNA:   3'- caAGCGcuGCCGGCCGuuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 44773 0.68 0.417661
Target:  5'- --gCGCGGC-GCCGGCGgcgcgcAGACGUUGa -3'
miRNA:   3'- caaGCGCUGcCGGCCGU------UCUGCGAUa -5'
24175 3' -57 NC_005263.2 + 39013 0.69 0.396166
Target:  5'- uGUUCGUGAacCGGCCgaucgacccgaacuGGCAcgucgAGGCGCUAc -3'
miRNA:   3'- -CAAGCGCU--GCCGG--------------CCGU-----UCUGCGAUa -5'
24175 3' -57 NC_005263.2 + 12545 0.83 0.043239
Target:  5'- cGUUCGCGGCGGCCGGC--GGCGCc-- -3'
miRNA:   3'- -CAAGCGCUGCCGGCCGuuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 31617 0.75 0.166815
Target:  5'- -gUCGCGACGGCCGcGC--GGCGCa-- -3'
miRNA:   3'- caAGCGCUGCCGGC-CGuuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 18682 0.72 0.243021
Target:  5'- cGUUCGCGcagcaagcuaGCGGCgCGGCA-GGCGCg-- -3'
miRNA:   3'- -CAAGCGC----------UGCCG-GCCGUuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 44164 0.71 0.276571
Target:  5'- -cUCGCuGGCuGGCgCGuGCGAGGCGCUAg -3'
miRNA:   3'- caAGCG-CUG-CCG-GC-CGUUCUGCGAUa -5'
24175 3' -57 NC_005263.2 + 47241 0.71 0.298422
Target:  5'- ---aGCGcCGGCCGGCAcgacgGGuACGCUGUc -3'
miRNA:   3'- caagCGCuGCCGGCCGU-----UC-UGCGAUA- -5'
24175 3' -57 NC_005263.2 + 39286 0.71 0.298422
Target:  5'- -aUCGCacgccgaGCGGCCGGCA-GGCGCa-- -3'
miRNA:   3'- caAGCGc------UGCCGGCCGUuCUGCGaua -5'
24175 3' -57 NC_005263.2 + 38218 0.71 0.305997
Target:  5'- -cUCGCGAUGGCCGcCGAGAaGCUc- -3'
miRNA:   3'- caAGCGCUGCCGGCcGUUCUgCGAua -5'
24175 3' -57 NC_005263.2 + 22497 0.7 0.313718
Target:  5'- ---gGCGGCGGCCGGCGGcgguucGGCgGCUGc -3'
miRNA:   3'- caagCGCUGCCGGCCGUU------CUG-CGAUa -5'
24175 3' -57 NC_005263.2 + 47417 0.7 0.321586
Target:  5'- aGUUCauCGGCGcGCuCGGCAAGGCGCg-- -3'
miRNA:   3'- -CAAGc-GCUGC-CG-GCCGUUCUGCGaua -5'
24175 3' -57 NC_005263.2 + 44577 0.69 0.363119
Target:  5'- --aCGaCGcCGGCC-GCGAGACGCUGa -3'
miRNA:   3'- caaGC-GCuGCCGGcCGUUCUGCGAUa -5'
24175 3' -57 NC_005263.2 + 20411 0.66 0.572652
Target:  5'- --aUGCGGCcGCCGGCGccGGCGCg-- -3'
miRNA:   3'- caaGCGCUGcCGGCCGUu-CUGCGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.