miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24175 5' -59.5 NC_005263.2 + 24684 0.66 0.454896
Target:  5'- cGGgGGCGCCgGUAAcGGCGGCgCGCc -3'
miRNA:   3'- aCUgCUGCGG-CGUUcCCGUCGaGCGu -5'
24175 5' -59.5 NC_005263.2 + 22107 0.66 0.454896
Target:  5'- gUGACGGCuGCCGCc--GGCAcGCU-GCAa -3'
miRNA:   3'- -ACUGCUG-CGGCGuucCCGU-CGAgCGU- -5'
24175 5' -59.5 NC_005263.2 + 23296 0.66 0.451962
Target:  5'- gGACaGGCGCCGUuuuacggcggccagGcGGGCGGCaccguugcauUCGCAc -3'
miRNA:   3'- aCUG-CUGCGGCG--------------UuCCCGUCG----------AGCGU- -5'
24175 5' -59.5 NC_005263.2 + 21038 0.66 0.449038
Target:  5'- aGACGAuggguagcggcuuccUGCC-CGAcGGGCGGCcgCGCAu -3'
miRNA:   3'- aCUGCU---------------GCGGcGUU-CCCGUCGa-GCGU- -5'
24175 5' -59.5 NC_005263.2 + 26200 0.66 0.445156
Target:  5'- -cGCGGCgGCCGCGcgauGcGGCGGCcguUCGCGa -3'
miRNA:   3'- acUGCUG-CGGCGUu---C-CCGUCG---AGCGU- -5'
24175 5' -59.5 NC_005263.2 + 8853 0.66 0.445156
Target:  5'- aGGCGGCG-CGCGGGGcGCgAGCccCGCu -3'
miRNA:   3'- aCUGCUGCgGCGUUCC-CG-UCGa-GCGu -5'
24175 5' -59.5 NC_005263.2 + 43204 0.66 0.445156
Target:  5'- aUGGCGACGgCGCGcuaucGCAGCgCGCGc -3'
miRNA:   3'- -ACUGCUGCgGCGUucc--CGUCGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 23907 0.66 0.439368
Target:  5'- gUGAgcGCGcCCGCGAGcgugaccgucgcuuuGGCGGCUUGCGc -3'
miRNA:   3'- -ACUgcUGC-GGCGUUC---------------CCGUCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 19873 0.66 0.435533
Target:  5'- cGGCGAgCGCgGCGAGcGCGGCcgaUGCAg -3'
miRNA:   3'- aCUGCU-GCGgCGUUCcCGUCGa--GCGU- -5'
24175 5' -59.5 NC_005263.2 + 31551 0.66 0.435533
Target:  5'- uUGGCGuCGCUGCccaGGCGGCgCGCc -3'
miRNA:   3'- -ACUGCuGCGGCGuucCCGUCGaGCGu -5'
24175 5' -59.5 NC_005263.2 + 12580 0.66 0.435533
Target:  5'- -cGCG-CGCCGCcGGGcGCAGUcggCGCGc -3'
miRNA:   3'- acUGCuGCGGCGuUCC-CGUCGa--GCGU- -5'
24175 5' -59.5 NC_005263.2 + 1422 0.66 0.435533
Target:  5'- cGGCGcGCGCCGCcuuGGCuGCgCGCGa -3'
miRNA:   3'- aCUGC-UGCGGCGuucCCGuCGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 31359 0.66 0.434578
Target:  5'- -cGCGACuccauaaagcccuGCUGCugcGGGCuGCUCGCGc -3'
miRNA:   3'- acUGCUG-------------CGGCGuu-CCCGuCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 14365 0.66 0.426032
Target:  5'- uUGACGACGggcCCGaugccGGGCcGCUCGUc -3'
miRNA:   3'- -ACUGCUGC---GGCguu--CCCGuCGAGCGu -5'
24175 5' -59.5 NC_005263.2 + 20639 0.66 0.426032
Target:  5'- aGGcCGugGCCGCAGuGGCcgcgccGCUCGUc -3'
miRNA:   3'- aCU-GCugCGGCGUUcCCGu-----CGAGCGu -5'
24175 5' -59.5 NC_005263.2 + 44766 0.66 0.416655
Target:  5'- cGACcgcGCGCgGCGccGGCGGCgCGCAg -3'
miRNA:   3'- aCUGc--UGCGgCGUucCCGUCGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 20112 0.66 0.416655
Target:  5'- -aGCGuCGCCGCGcAGGGUuacGGCaagCGCGa -3'
miRNA:   3'- acUGCuGCGGCGU-UCCCG---UCGa--GCGU- -5'
24175 5' -59.5 NC_005263.2 + 82 0.66 0.416655
Target:  5'- aGACGACGCgaaaUGCGAGauuGCGGUcgUCGCGc -3'
miRNA:   3'- aCUGCUGCG----GCGUUCc--CGUCG--AGCGU- -5'
24175 5' -59.5 NC_005263.2 + 20875 0.66 0.416655
Target:  5'- -aACGGCGCUGCGccAGuGGCAGgaggCGCAc -3'
miRNA:   3'- acUGCUGCGGCGU--UC-CCGUCga--GCGU- -5'
24175 5' -59.5 NC_005263.2 + 15396 0.66 0.407406
Target:  5'- uUGGCGAU-CCGCAcggcGGGCAGCaaGCc -3'
miRNA:   3'- -ACUGCUGcGGCGUu---CCCGUCGagCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.