miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24175 5' -59.5 NC_005263.2 + 9554 0.67 0.389298
Target:  5'- -cGCGGCGCuCGCGgcuugccaGGcGGCGcGCUCGCu -3'
miRNA:   3'- acUGCUGCG-GCGU--------UC-CCGU-CGAGCGu -5'
24175 5' -59.5 NC_005263.2 + 47150 0.67 0.354701
Target:  5'- aGGCGAcCGCCGCuacgucGCcGCUCGCGg -3'
miRNA:   3'- aCUGCU-GCGGCGuucc--CGuCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 48051 0.67 0.398286
Target:  5'- cUGACGuGCGCCGCAAgcGGGCccaucGaaCGCAc -3'
miRNA:   3'- -ACUGC-UGCGGCGUU--CCCGu----CgaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 3233 0.67 0.371726
Target:  5'- cGAUGACGCC----GGGCAGCaUCuGCAc -3'
miRNA:   3'- aCUGCUGCGGcguuCCCGUCG-AG-CGU- -5'
24175 5' -59.5 NC_005263.2 + 42944 0.67 0.363144
Target:  5'- aGGCGcaaaccGCGCUGCucgacaacacGGGCGGUUCGCc -3'
miRNA:   3'- aCUGC------UGCGGCGuu--------CCCGUCGAGCGu -5'
24175 5' -59.5 NC_005263.2 + 31257 0.67 0.398286
Target:  5'- -cGCGGCGCgGCGccGGGCAGgUCGa- -3'
miRNA:   3'- acUGCUGCGgCGUu-CCCGUCgAGCgu -5'
24175 5' -59.5 NC_005263.2 + 32002 0.67 0.354701
Target:  5'- gUGGCGGgaGUgGCAcuguGGGCGGCgagCGCAa -3'
miRNA:   3'- -ACUGCUg-CGgCGUu---CCCGUCGa--GCGU- -5'
24175 5' -59.5 NC_005263.2 + 1464 0.67 0.398286
Target:  5'- -cGCGGCGCUGCAgcaugaacAGcaGGC-GCUCGCGg -3'
miRNA:   3'- acUGCUGCGGCGU--------UC--CCGuCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 18750 0.67 0.398286
Target:  5'- aGAuCGGCGCgauCGUAGGcGGCGcgguGCUCGCGc -3'
miRNA:   3'- aCU-GCUGCG---GCGUUC-CCGU----CGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 42694 0.67 0.363144
Target:  5'- cGACGcUGCCGCGAuGGCAGaagaaCGCGa -3'
miRNA:   3'- aCUGCuGCGGCGUUcCCGUCga---GCGU- -5'
24175 5' -59.5 NC_005263.2 + 14953 0.67 0.389298
Target:  5'- cGAUgcaaGGCGCCGCGccauggcuGGcGGCAGCgaucugCGCGu -3'
miRNA:   3'- aCUG----CUGCGGCGU--------UC-CCGUCGa-----GCGU- -5'
24175 5' -59.5 NC_005263.2 + 10903 0.67 0.363144
Target:  5'- cGGCGuauCGCCGCGcuGGGGgAuGC-CGCAc -3'
miRNA:   3'- aCUGCu--GCGGCGU--UCCCgU-CGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 32761 0.68 0.346398
Target:  5'- cGACGuucaGCGCCGCGucGGGGUucucggugucGGCcCGCGc -3'
miRNA:   3'- aCUGC----UGCGGCGU--UCCCG----------UCGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 10323 0.68 0.306992
Target:  5'- -aACGACGCucgucgaucucgCGCAGGcgcGGCAGCUUGCc -3'
miRNA:   3'- acUGCUGCG------------GCGUUC---CCGUCGAGCGu -5'
24175 5' -59.5 NC_005263.2 + 11704 0.68 0.306992
Target:  5'- cGA-GGCGCUGCGAGGGCgucaugucgAGCUUGa- -3'
miRNA:   3'- aCUgCUGCGGCGUUCCCG---------UCGAGCgu -5'
24175 5' -59.5 NC_005263.2 + 41155 0.68 0.338235
Target:  5'- cGGCGuucGCGCgGCGuGGGCGGCcgUCGUc -3'
miRNA:   3'- aCUGC---UGCGgCGUuCCCGUCG--AGCGu -5'
24175 5' -59.5 NC_005263.2 + 9190 0.68 0.338235
Target:  5'- -aGCGACGCgggugCGCAAacGGGCGgcGCUCGUAc -3'
miRNA:   3'- acUGCUGCG-----GCGUU--CCCGU--CGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 38136 0.68 0.338235
Target:  5'- gGACGGCGUgCGCAgcccgcAGGGCAGCgaagaCGaCGa -3'
miRNA:   3'- aCUGCUGCG-GCGU------UCCCGUCGa----GC-GU- -5'
24175 5' -59.5 NC_005263.2 + 40948 0.68 0.330212
Target:  5'- cGGCGAUgGCCGCGcaauAGGGUcGCUUGaCAu -3'
miRNA:   3'- aCUGCUG-CGGCGU----UCCCGuCGAGC-GU- -5'
24175 5' -59.5 NC_005263.2 + 40888 0.68 0.325466
Target:  5'- cGcAUGGCGCCGUcgccugaucgcuggaAAGGcGCAGC-CGCAc -3'
miRNA:   3'- aC-UGCUGCGGCG---------------UUCC-CGUCGaGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.