miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24175 5' -59.5 NC_005263.2 + 21901 1.08 0.000328
Target:  5'- uUGACGACGCCGCAAGGGCAGCUCGCAa -3'
miRNA:   3'- -ACUGCUGCGGCGUUCCCGUCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 32916 0.77 0.07776
Target:  5'- uUGcCGACGUCGCGc-GGCGGCUCGCGu -3'
miRNA:   3'- -ACuGCUGCGGCGUucCCGUCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 16553 0.76 0.097509
Target:  5'- cGGCG-CGCCGCcuGGGCAGCgaCGCc -3'
miRNA:   3'- aCUGCuGCGGCGuuCCCGUCGa-GCGu -5'
24175 5' -59.5 NC_005263.2 + 18604 0.75 0.103143
Target:  5'- cGACgGACGCCGCAGcGGC-GUUCGCGg -3'
miRNA:   3'- aCUG-CUGCGGCGUUcCCGuCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 24543 0.75 0.106074
Target:  5'- cGGCGGCGgCGCGGGcGGCGGCggcugCGCc -3'
miRNA:   3'- aCUGCUGCgGCGUUC-CCGUCGa----GCGu -5'
24175 5' -59.5 NC_005263.2 + 17720 0.73 0.143864
Target:  5'- cGACGAgcgcCGCCGCAuGGG--GCUCGCAc -3'
miRNA:   3'- aCUGCU----GCGGCGUuCCCguCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 16484 0.73 0.147852
Target:  5'- aGACGGCGCUGCGccGcGCGGCcgUCGCGa -3'
miRNA:   3'- aCUGCUGCGGCGUucC-CGUCG--AGCGU- -5'
24175 5' -59.5 NC_005263.2 + 47401 0.73 0.151942
Target:  5'- -cACGGCGCuCGCGGGcGGCGGCacgaUCGCGc -3'
miRNA:   3'- acUGCUGCG-GCGUUC-CCGUCG----AGCGU- -5'
24175 5' -59.5 NC_005263.2 + 16587 0.73 0.154865
Target:  5'- cGGCGACGCguuCGCcGGGcucgcgcgcgagcaGCAGCUCGCGc -3'
miRNA:   3'- aCUGCUGCG---GCGuUCC--------------CGUCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 5610 0.73 0.156134
Target:  5'- cGGCGAgGCCGUgc-GGCAGUUUGCAg -3'
miRNA:   3'- aCUGCUgCGGCGuucCCGUCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 38517 0.73 0.156134
Target:  5'- cGACG-UGUCGCAggucgccaAGGGCAGCgagCGCGc -3'
miRNA:   3'- aCUGCuGCGGCGU--------UCCCGUCGa--GCGU- -5'
24175 5' -59.5 NC_005263.2 + 42049 0.72 0.164832
Target:  5'- cGGCGcgcgugaagcGCGCCGCcaacgaacGGGGCGuGCUCGCGg -3'
miRNA:   3'- aCUGC----------UGCGGCGu-------UCCCGU-CGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 29054 0.7 0.23199
Target:  5'- aGGCcGCGCgGCGcguccucGGGGCGGCgCGCAu -3'
miRNA:   3'- aCUGcUGCGgCGU-------UCCCGUCGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 3458 0.7 0.232591
Target:  5'- -cGCGACGCauCGAGGcGCAGCUCGa- -3'
miRNA:   3'- acUGCUGCGgcGUUCC-CGUCGAGCgu -5'
24175 5' -59.5 NC_005263.2 + 11887 0.7 0.2506
Target:  5'- cUGACGACGCgGCGccGGGCGccugcgcGCUgGCGu -3'
miRNA:   3'- -ACUGCUGCGgCGUu-CCCGU-------CGAgCGU- -5'
24175 5' -59.5 NC_005263.2 + 19761 0.7 0.257727
Target:  5'- cUGGCGGCGCuCGUGGccguguGGGCAaucGUUCGCAa -3'
miRNA:   3'- -ACUGCUGCG-GCGUU------CCCGU---CGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 42183 0.7 0.257727
Target:  5'- aUGACGcucACGCC-CGAGGGCAacagcgucCUCGCAu -3'
miRNA:   3'- -ACUGC---UGCGGcGUUCCCGUc-------GAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 24311 0.69 0.264349
Target:  5'- aGACGGcCGCCgGCAcGGGCA--UCGCAa -3'
miRNA:   3'- aCUGCU-GCGG-CGUuCCCGUcgAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 22107 0.69 0.264349
Target:  5'- cGGCGAagUGCCGCGcgAGuGGCAGCUgaaaGCGu -3'
miRNA:   3'- aCUGCU--GCGGCGU--UC-CCGUCGAg---CGU- -5'
24175 5' -59.5 NC_005263.2 + 2046 0.69 0.271107
Target:  5'- cGuCGACGcCCGCGc-GGUAGUUCGCGg -3'
miRNA:   3'- aCuGCUGC-GGCGUucCCGUCGAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.