Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 24684 | 0.66 | 0.454896 |
Target: 5'- cGGgGGCGCCgGUAAcGGCGGCgCGCc -3' miRNA: 3'- aCUgCUGCGG-CGUUcCCGUCGaGCGu -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 22107 | 0.66 | 0.454896 |
Target: 5'- gUGACGGCuGCCGCc--GGCAcGCU-GCAa -3' miRNA: 3'- -ACUGCUG-CGGCGuucCCGU-CGAgCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 23296 | 0.66 | 0.451962 |
Target: 5'- gGACaGGCGCCGUuuuacggcggccagGcGGGCGGCaccguugcauUCGCAc -3' miRNA: 3'- aCUG-CUGCGGCG--------------UuCCCGUCG----------AGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 21038 | 0.66 | 0.449038 |
Target: 5'- aGACGAuggguagcggcuuccUGCC-CGAcGGGCGGCcgCGCAu -3' miRNA: 3'- aCUGCU---------------GCGGcGUU-CCCGUCGa-GCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 26200 | 0.66 | 0.445156 |
Target: 5'- -cGCGGCgGCCGCGcgauGcGGCGGCcguUCGCGa -3' miRNA: 3'- acUGCUG-CGGCGUu---C-CCGUCG---AGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 8853 | 0.66 | 0.445156 |
Target: 5'- aGGCGGCG-CGCGGGGcGCgAGCccCGCu -3' miRNA: 3'- aCUGCUGCgGCGUUCC-CG-UCGa-GCGu -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 43204 | 0.66 | 0.445156 |
Target: 5'- aUGGCGACGgCGCGcuaucGCAGCgCGCGc -3' miRNA: 3'- -ACUGCUGCgGCGUucc--CGUCGaGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 23907 | 0.66 | 0.439368 |
Target: 5'- gUGAgcGCGcCCGCGAGcgugaccgucgcuuuGGCGGCUUGCGc -3' miRNA: 3'- -ACUgcUGC-GGCGUUC---------------CCGUCGAGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 19873 | 0.66 | 0.435533 |
Target: 5'- cGGCGAgCGCgGCGAGcGCGGCcgaUGCAg -3' miRNA: 3'- aCUGCU-GCGgCGUUCcCGUCGa--GCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 31551 | 0.66 | 0.435533 |
Target: 5'- uUGGCGuCGCUGCccaGGCGGCgCGCc -3' miRNA: 3'- -ACUGCuGCGGCGuucCCGUCGaGCGu -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 12580 | 0.66 | 0.435533 |
Target: 5'- -cGCG-CGCCGCcGGGcGCAGUcggCGCGc -3' miRNA: 3'- acUGCuGCGGCGuUCC-CGUCGa--GCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 1422 | 0.66 | 0.435533 |
Target: 5'- cGGCGcGCGCCGCcuuGGCuGCgCGCGa -3' miRNA: 3'- aCUGC-UGCGGCGuucCCGuCGaGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 31359 | 0.66 | 0.434578 |
Target: 5'- -cGCGACuccauaaagcccuGCUGCugcGGGCuGCUCGCGc -3' miRNA: 3'- acUGCUG-------------CGGCGuu-CCCGuCGAGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 14365 | 0.66 | 0.426032 |
Target: 5'- uUGACGACGggcCCGaugccGGGCcGCUCGUc -3' miRNA: 3'- -ACUGCUGC---GGCguu--CCCGuCGAGCGu -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 20639 | 0.66 | 0.426032 |
Target: 5'- aGGcCGugGCCGCAGuGGCcgcgccGCUCGUc -3' miRNA: 3'- aCU-GCugCGGCGUUcCCGu-----CGAGCGu -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 44766 | 0.66 | 0.416655 |
Target: 5'- cGACcgcGCGCgGCGccGGCGGCgCGCAg -3' miRNA: 3'- aCUGc--UGCGgCGUucCCGUCGaGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 20112 | 0.66 | 0.416655 |
Target: 5'- -aGCGuCGCCGCGcAGGGUuacGGCaagCGCGa -3' miRNA: 3'- acUGCuGCGGCGU-UCCCG---UCGa--GCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 82 | 0.66 | 0.416655 |
Target: 5'- aGACGACGCgaaaUGCGAGauuGCGGUcgUCGCGc -3' miRNA: 3'- aCUGCUGCG----GCGUUCc--CGUCG--AGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 20875 | 0.66 | 0.416655 |
Target: 5'- -aACGGCGCUGCGccAGuGGCAGgaggCGCAc -3' miRNA: 3'- acUGCUGCGGCGU--UC-CCGUCga--GCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 15396 | 0.66 | 0.407406 |
Target: 5'- uUGGCGAU-CCGCAcggcGGGCAGCaaGCc -3' miRNA: 3'- -ACUGCUGcGGCGUu---CCCGUCGagCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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