miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24175 5' -59.5 NC_005263.2 + 82 0.66 0.416655
Target:  5'- aGACGACGCgaaaUGCGAGauuGCGGUcgUCGCGc -3'
miRNA:   3'- aCUGCUGCG----GCGUUCc--CGUCG--AGCGU- -5'
24175 5' -59.5 NC_005263.2 + 1422 0.66 0.435533
Target:  5'- cGGCGcGCGCCGCcuuGGCuGCgCGCGa -3'
miRNA:   3'- aCUGC-UGCGGCGuucCCGuCGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 1464 0.67 0.398286
Target:  5'- -cGCGGCGCUGCAgcaugaacAGcaGGC-GCUCGCGg -3'
miRNA:   3'- acUGCUGCGGCGU--------UC--CCGuCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 2046 0.69 0.271107
Target:  5'- cGuCGACGcCCGCGc-GGUAGUUCGCGg -3'
miRNA:   3'- aCuGCUGC-GGCGUucCCGUCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 3233 0.67 0.371726
Target:  5'- cGAUGACGCC----GGGCAGCaUCuGCAc -3'
miRNA:   3'- aCUGCUGCGGcguuCCCGUCG-AG-CGU- -5'
24175 5' -59.5 NC_005263.2 + 3458 0.7 0.232591
Target:  5'- -cGCGACGCauCGAGGcGCAGCUCGa- -3'
miRNA:   3'- acUGCUGCGgcGUUCC-CGUCGAGCgu -5'
24175 5' -59.5 NC_005263.2 + 5610 0.73 0.156134
Target:  5'- cGGCGAgGCCGUgc-GGCAGUUUGCAg -3'
miRNA:   3'- aCUGCUgCGGCGuucCCGUCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 8853 0.66 0.445156
Target:  5'- aGGCGGCG-CGCGGGGcGCgAGCccCGCu -3'
miRNA:   3'- aCUGCUGCgGCGUUCC-CG-UCGa-GCGu -5'
24175 5' -59.5 NC_005263.2 + 9190 0.68 0.338235
Target:  5'- -aGCGACGCgggugCGCAAacGGGCGgcGCUCGUAc -3'
miRNA:   3'- acUGCUGCG-----GCGUU--CCCGU--CGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 9554 0.67 0.389298
Target:  5'- -cGCGGCGCuCGCGgcuugccaGGcGGCGcGCUCGCu -3'
miRNA:   3'- acUGCUGCG-GCGU--------UC-CCGU-CGAGCGu -5'
24175 5' -59.5 NC_005263.2 + 10323 0.68 0.306992
Target:  5'- -aACGACGCucgucgaucucgCGCAGGcgcGGCAGCUUGCc -3'
miRNA:   3'- acUGCUGCG------------GCGUUC---CCGUCGAGCGu -5'
24175 5' -59.5 NC_005263.2 + 10903 0.67 0.363144
Target:  5'- cGGCGuauCGCCGCGcuGGGGgAuGC-CGCAc -3'
miRNA:   3'- aCUGCu--GCGGCGU--UCCCgU-CGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 11090 0.68 0.31459
Target:  5'- gGAUGACGCCGCGcGuaaGCAGCUguucCGCu -3'
miRNA:   3'- aCUGCUGCGGCGUuCc--CGUCGA----GCGu -5'
24175 5' -59.5 NC_005263.2 + 11704 0.68 0.306992
Target:  5'- cGA-GGCGCUGCGAGGGCgucaugucgAGCUUGa- -3'
miRNA:   3'- aCUgCUGCGGCGUUCCCG---------UCGAGCgu -5'
24175 5' -59.5 NC_005263.2 + 11887 0.7 0.2506
Target:  5'- cUGACGACGCgGCGccGGGCGccugcgcGCUgGCGu -3'
miRNA:   3'- -ACUGCUGCGgCGUu-CCCGU-------CGAgCGU- -5'
24175 5' -59.5 NC_005263.2 + 12491 0.69 0.285041
Target:  5'- uUGGCGGCauucUCGCAguucgcauuGGGGCAGUUUGCGc -3'
miRNA:   3'- -ACUGCUGc---GGCGU---------UCCCGUCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 12580 0.66 0.435533
Target:  5'- -cGCG-CGCCGCcGGGcGCAGUcggCGCGc -3'
miRNA:   3'- acUGCuGCGGCGuUCC-CGUCGa--GCGU- -5'
24175 5' -59.5 NC_005263.2 + 12827 0.69 0.283623
Target:  5'- -uAUGGCGCCGCAcuuggcgccaucGGGCAGCcCGUAu -3'
miRNA:   3'- acUGCUGCGGCGUu-----------CCCGUCGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 14365 0.66 0.426032
Target:  5'- uUGACGACGggcCCGaugccGGGCcGCUCGUc -3'
miRNA:   3'- -ACUGCUGC---GGCguu--CCCGuCGAGCGu -5'
24175 5' -59.5 NC_005263.2 + 14953 0.67 0.389298
Target:  5'- cGAUgcaaGGCGCCGCGccauggcuGGcGGCAGCgaucugCGCGu -3'
miRNA:   3'- aCUG----CUGCGGCGU--------UC-CCGUCGa-----GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.