Results 1 - 20 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 32916 | 0.77 | 0.07776 |
Target: 5'- uUGcCGACGUCGCGc-GGCGGCUCGCGu -3' miRNA: 3'- -ACuGCUGCGGCGUucCCGUCGAGCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 9554 | 0.67 | 0.389298 |
Target: 5'- -cGCGGCGCuCGCGgcuugccaGGcGGCGcGCUCGCu -3' miRNA: 3'- acUGCUGCG-GCGU--------UC-CCGU-CGAGCGu -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 15396 | 0.66 | 0.407406 |
Target: 5'- uUGGCGAU-CCGCAcggcGGGCAGCaaGCc -3' miRNA: 3'- -ACUGCUGcGGCGUu---CCCGUCGagCGu -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 21038 | 0.66 | 0.449038 |
Target: 5'- aGACGAuggguagcggcuuccUGCC-CGAcGGGCGGCcgCGCAu -3' miRNA: 3'- aCUGCU---------------GCGGcGUU-CCCGUCGa-GCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 29054 | 0.7 | 0.23199 |
Target: 5'- aGGCcGCGCgGCGcguccucGGGGCGGCgCGCAu -3' miRNA: 3'- aCUGcUGCGgCGU-------UCCCGUCGaGCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 11887 | 0.7 | 0.2506 |
Target: 5'- cUGACGACGCgGCGccGGGCGccugcgcGCUgGCGu -3' miRNA: 3'- -ACUGCUGCGgCGUu-CCCGU-------CGAgCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 19761 | 0.7 | 0.257727 |
Target: 5'- cUGGCGGCGCuCGUGGccguguGGGCAaucGUUCGCAa -3' miRNA: 3'- -ACUGCUGCG-GCGUU------CCCGU---CGAGCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 22107 | 0.69 | 0.264349 |
Target: 5'- cGGCGAagUGCCGCGcgAGuGGCAGCUgaaaGCGu -3' miRNA: 3'- aCUGCU--GCGGCGU--UC-CCGUCGAg---CGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 38510 | 0.69 | 0.299534 |
Target: 5'- cGAUGAucgcgcUGCCGCAAuGGGaCGGCaCGCAg -3' miRNA: 3'- aCUGCU------GCGGCGUU-CCC-GUCGaGCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 3233 | 0.67 | 0.371726 |
Target: 5'- cGAUGACGCC----GGGCAGCaUCuGCAc -3' miRNA: 3'- aCUGCUGCGGcguuCCCGUCG-AG-CGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 11090 | 0.68 | 0.31459 |
Target: 5'- gGAUGACGCCGCGcGuaaGCAGCUguucCGCu -3' miRNA: 3'- aCUGCUGCGGCGUuCc--CGUCGA----GCGu -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 24326 | 0.69 | 0.271107 |
Target: 5'- --uCGGCgGUCGUAAcGGGCAGCUCGaCAc -3' miRNA: 3'- acuGCUG-CGGCGUU-CCCGUCGAGC-GU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 18604 | 0.75 | 0.103143 |
Target: 5'- cGACgGACGCCGCAGcGGC-GUUCGCGg -3' miRNA: 3'- aCUG-CUGCGGCGUUcCCGuCGAGCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 32761 | 0.68 | 0.346398 |
Target: 5'- cGACGuucaGCGCCGCGucGGGGUucucggugucGGCcCGCGc -3' miRNA: 3'- aCUGC----UGCGGCGU--UCCCG----------UCGaGCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 5610 | 0.73 | 0.156134 |
Target: 5'- cGGCGAgGCCGUgc-GGCAGUUUGCAg -3' miRNA: 3'- aCUGCUgCGGCGuucCCGUCGAGCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 2046 | 0.69 | 0.271107 |
Target: 5'- cGuCGACGcCCGCGc-GGUAGUUCGCGg -3' miRNA: 3'- aCuGCUGC-GGCGUucCCGUCGAGCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 47150 | 0.67 | 0.354701 |
Target: 5'- aGGCGAcCGCCGCuacgucGCcGCUCGCGg -3' miRNA: 3'- aCUGCU-GCGGCGuucc--CGuCGAGCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 48051 | 0.67 | 0.398286 |
Target: 5'- cUGACGuGCGCCGCAAgcGGGCccaucGaaCGCAc -3' miRNA: 3'- -ACUGC-UGCGGCGUU--CCCGu----CgaGCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 42049 | 0.72 | 0.164832 |
Target: 5'- cGGCGcgcgugaagcGCGCCGCcaacgaacGGGGCGuGCUCGCGg -3' miRNA: 3'- aCUGC----------UGCGGCGu-------UCCCGU-CGAGCGU- -5' |
|||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 42183 | 0.7 | 0.257727 |
Target: 5'- aUGACGcucACGCC-CGAGGGCAacagcgucCUCGCAu -3' miRNA: 3'- -ACUGC---UGCGGcGUUCCCGUc-------GAGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home