miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24175 5' -59.5 NC_005263.2 + 42183 0.7 0.257727
Target:  5'- aUGACGcucACGCC-CGAGGGCAacagcgucCUCGCAu -3'
miRNA:   3'- -ACUGC---UGCGGcGUUCCCGUc-------GAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 12580 0.66 0.435533
Target:  5'- -cGCG-CGCCGCcGGGcGCAGUcggCGCGc -3'
miRNA:   3'- acUGCuGCGGCGuUCC-CGUCGa--GCGU- -5'
24175 5' -59.5 NC_005263.2 + 15396 0.66 0.407406
Target:  5'- uUGGCGAU-CCGCAcggcGGGCAGCaaGCc -3'
miRNA:   3'- -ACUGCUGcGGCGUu---CCCGUCGagCGu -5'
24175 5' -59.5 NC_005263.2 + 11887 0.7 0.2506
Target:  5'- cUGACGACGCgGCGccGGGCGccugcgcGCUgGCGu -3'
miRNA:   3'- -ACUGCUGCGgCGUu-CCCGU-------CGAgCGU- -5'
24175 5' -59.5 NC_005263.2 + 20639 0.66 0.426032
Target:  5'- aGGcCGugGCCGCAGuGGCcgcgccGCUCGUc -3'
miRNA:   3'- aCU-GCugCGGCGUUcCCGu-----CGAGCGu -5'
24175 5' -59.5 NC_005263.2 + 23907 0.66 0.439368
Target:  5'- gUGAgcGCGcCCGCGAGcgugaccgucgcuuuGGCGGCUUGCGc -3'
miRNA:   3'- -ACUgcUGC-GGCGUUC---------------CCGUCGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 31551 0.66 0.435533
Target:  5'- uUGGCGuCGCUGCccaGGCGGCgCGCc -3'
miRNA:   3'- -ACUGCuGCGGCGuucCCGUCGaGCGu -5'
24175 5' -59.5 NC_005263.2 + 29054 0.7 0.23199
Target:  5'- aGGCcGCGCgGCGcguccucGGGGCGGCgCGCAu -3'
miRNA:   3'- aCUGcUGCGgCGU-------UCCCGUCGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 42049 0.72 0.164832
Target:  5'- cGGCGcgcgugaagcGCGCCGCcaacgaacGGGGCGuGCUCGCGg -3'
miRNA:   3'- aCUGC----------UGCGGCGu-------UCCCGU-CGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 19761 0.7 0.257727
Target:  5'- cUGGCGGCGCuCGUGGccguguGGGCAaucGUUCGCAa -3'
miRNA:   3'- -ACUGCUGCG-GCGUU------CCCGU---CGAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 11090 0.68 0.31459
Target:  5'- gGAUGACGCCGCGcGuaaGCAGCUguucCGCu -3'
miRNA:   3'- aCUGCUGCGGCGUuCc--CGUCGA----GCGu -5'
24175 5' -59.5 NC_005263.2 + 20112 0.66 0.416655
Target:  5'- -aGCGuCGCCGCGcAGGGUuacGGCaagCGCGa -3'
miRNA:   3'- acUGCuGCGGCGU-UCCCG---UCGa--GCGU- -5'
24175 5' -59.5 NC_005263.2 + 3458 0.7 0.232591
Target:  5'- -cGCGACGCauCGAGGcGCAGCUCGa- -3'
miRNA:   3'- acUGCUGCGgcGUUCC-CGUCGAGCgu -5'
24175 5' -59.5 NC_005263.2 + 24311 0.69 0.264349
Target:  5'- aGACGGcCGCCgGCAcGGGCA--UCGCAa -3'
miRNA:   3'- aCUGCU-GCGG-CGUuCCCGUcgAGCGU- -5'
24175 5' -59.5 NC_005263.2 + 37932 0.69 0.278005
Target:  5'- aGGCG-CGCCGCc--GGCAGCcggugCGCAa -3'
miRNA:   3'- aCUGCuGCGGCGuucCCGUCGa----GCGU- -5'
24175 5' -59.5 NC_005263.2 + 44689 0.69 0.278005
Target:  5'- cGACGGCGCCGCA---GCAGUUCu-- -3'
miRNA:   3'- aCUGCUGCGGCGUuccCGUCGAGcgu -5'
24175 5' -59.5 NC_005263.2 + 12827 0.69 0.283623
Target:  5'- -uAUGGCGCCGCAcuuggcgccaucGGGCAGCcCGUAu -3'
miRNA:   3'- acUGCUGCGGCGUu-----------CCCGUCGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 14953 0.67 0.389298
Target:  5'- cGAUgcaaGGCGCCGCGccauggcuGGcGGCAGCgaucugCGCGu -3'
miRNA:   3'- aCUG----CUGCGGCGU--------UC-CCGUCGa-----GCGU- -5'
24175 5' -59.5 NC_005263.2 + 10903 0.67 0.363144
Target:  5'- cGGCGuauCGCCGCGcuGGGGgAuGC-CGCAc -3'
miRNA:   3'- aCUGCu--GCGGCGU--UCCCgU-CGaGCGU- -5'
24175 5' -59.5 NC_005263.2 + 42944 0.67 0.363144
Target:  5'- aGGCGcaaaccGCGCUGCucgacaacacGGGCGGUUCGCc -3'
miRNA:   3'- aCUGC------UGCGGCGuu--------CCCGUCGAGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.