Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24175 | 5' | -59.5 | NC_005263.2 | + | 40888 | 0.68 | 0.325466 |
Target: 5'- cGcAUGGCGCCGUcgccugaucgcuggaAAGGcGCAGC-CGCAc -3' miRNA: 3'- aC-UGCUGCGGCG---------------UUCC-CGUCGaGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 14953 | 0.67 | 0.389298 |
Target: 5'- cGAUgcaaGGCGCCGCGccauggcuGGcGGCAGCgaucugCGCGu -3' miRNA: 3'- aCUG----CUGCGGCGU--------UC-CCGUCGa-----GCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 10903 | 0.67 | 0.363144 |
Target: 5'- cGGCGuauCGCCGCGcuGGGGgAuGC-CGCAc -3' miRNA: 3'- aCUGCu--GCGGCGU--UCCCgU-CGaGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 42944 | 0.67 | 0.363144 |
Target: 5'- aGGCGcaaaccGCGCUGCucgacaacacGGGCGGUUCGCc -3' miRNA: 3'- aCUGC------UGCGGCGuu--------CCCGUCGAGCGu -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 32002 | 0.67 | 0.354701 |
Target: 5'- gUGGCGGgaGUgGCAcuguGGGCGGCgagCGCAa -3' miRNA: 3'- -ACUGCUg-CGgCGUu---CCCGUCGa--GCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 41155 | 0.68 | 0.338235 |
Target: 5'- cGGCGuucGCGCgGCGuGGGCGGCcgUCGUc -3' miRNA: 3'- aCUGC---UGCGgCGUuCCCGUCG--AGCGu -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 9190 | 0.68 | 0.338235 |
Target: 5'- -aGCGACGCgggugCGCAAacGGGCGgcGCUCGUAc -3' miRNA: 3'- acUGCUGCG-----GCGUU--CCCGU--CGAGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 38136 | 0.68 | 0.338235 |
Target: 5'- gGACGGCGUgCGCAgcccgcAGGGCAGCgaagaCGaCGa -3' miRNA: 3'- aCUGCUGCG-GCGU------UCCCGUCGa----GC-GU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 40948 | 0.68 | 0.330212 |
Target: 5'- cGGCGAUgGCCGCGcaauAGGGUcGCUUGaCAu -3' miRNA: 3'- aCUGCUG-CGGCGU----UCCCGuCGAGC-GU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 42694 | 0.67 | 0.363144 |
Target: 5'- cGACGcUGCCGCGAuGGCAGaagaaCGCGa -3' miRNA: 3'- aCUGCuGCGGCGUUcCCGUCga---GCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 18750 | 0.67 | 0.398286 |
Target: 5'- aGAuCGGCGCgauCGUAGGcGGCGcgguGCUCGCGc -3' miRNA: 3'- aCU-GCUGCG---GCGUUC-CCGU----CGAGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 1464 | 0.67 | 0.398286 |
Target: 5'- -cGCGGCGCUGCAgcaugaacAGcaGGC-GCUCGCGg -3' miRNA: 3'- acUGCUGCGGCGU--------UC--CCGuCGAGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 22107 | 0.66 | 0.454896 |
Target: 5'- gUGACGGCuGCCGCc--GGCAcGCU-GCAa -3' miRNA: 3'- -ACUGCUG-CGGCGuucCCGU-CGAgCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 23296 | 0.66 | 0.451962 |
Target: 5'- gGACaGGCGCCGUuuuacggcggccagGcGGGCGGCaccguugcauUCGCAc -3' miRNA: 3'- aCUG-CUGCGGCG--------------UuCCCGUCG----------AGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 43204 | 0.66 | 0.445156 |
Target: 5'- aUGGCGACGgCGCGcuaucGCAGCgCGCGc -3' miRNA: 3'- -ACUGCUGCgGCGUucc--CGUCGaGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 26200 | 0.66 | 0.445156 |
Target: 5'- -cGCGGCgGCCGCGcgauGcGGCGGCcguUCGCGa -3' miRNA: 3'- acUGCUG-CGGCGUu---C-CCGUCG---AGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 1422 | 0.66 | 0.435533 |
Target: 5'- cGGCGcGCGCCGCcuuGGCuGCgCGCGa -3' miRNA: 3'- aCUGC-UGCGGCGuucCCGuCGaGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 20112 | 0.66 | 0.416655 |
Target: 5'- -aGCGuCGCCGCGcAGGGUuacGGCaagCGCGa -3' miRNA: 3'- acUGCuGCGGCGU-UCCCG---UCGa--GCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 82 | 0.66 | 0.416655 |
Target: 5'- aGACGACGCgaaaUGCGAGauuGCGGUcgUCGCGc -3' miRNA: 3'- aCUGCUGCG----GCGUUCc--CGUCG--AGCGU- -5' |
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24175 | 5' | -59.5 | NC_005263.2 | + | 31257 | 0.67 | 0.398286 |
Target: 5'- -cGCGGCGCgGCGccGGGCAGgUCGa- -3' miRNA: 3'- acUGCUGCGgCGUu-CCCGUCgAGCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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