miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24178 3' -50 NC_005263.2 + 13852 0.66 0.926475
Target:  5'- gGUgcugCCGCAuuuucuUCCGCGUcgagcuacguaUGCACGGc-- -3'
miRNA:   3'- aCAa---GGCGU------AGGCGCA-----------ACGUGUUuag -5'
24178 3' -50 NC_005263.2 + 21938 0.66 0.913717
Target:  5'- cGUUuaUCGUcgCCGCGUgcaagcgcuguuUGCGCAguuGAUCg -3'
miRNA:   3'- aCAA--GGCGuaGGCGCA------------ACGUGU---UUAG- -5'
24178 3' -50 NC_005263.2 + 5073 0.66 0.913717
Target:  5'- cGcgCCGCGUcaggugccaacCCGCGcagugcUUGCACGAGUa -3'
miRNA:   3'- aCaaGGCGUA-----------GGCGC------AACGUGUUUAg -5'
24178 3' -50 NC_005263.2 + 21758 0.66 0.913047
Target:  5'- aUGggUCGCAcuaaugcUCCGCacgaGUgGCGCGAAUCa -3'
miRNA:   3'- -ACaaGGCGU-------AGGCG----CAaCGUGUUUAG- -5'
24178 3' -50 NC_005263.2 + 1129 0.66 0.906877
Target:  5'- --gUCCGCG-CCGUGcUGCGCAc--- -3'
miRNA:   3'- acaAGGCGUaGGCGCaACGUGUuuag -5'
24178 3' -50 NC_005263.2 + 31152 0.66 0.899733
Target:  5'- cGguaCGCcuugCCGUGUcgGCGCAGAUCg -3'
miRNA:   3'- aCaagGCGua--GGCGCAa-CGUGUUUAG- -5'
24178 3' -50 NC_005263.2 + 41657 0.66 0.899733
Target:  5'- aUGUUCgGCGacugccugCuCGCGaUGCACGAGUUg -3'
miRNA:   3'- -ACAAGgCGUa-------G-GCGCaACGUGUUUAG- -5'
24178 3' -50 NC_005263.2 + 47676 0.67 0.89229
Target:  5'- cGUUCCGCAcugCCGCGcaGC-CugucuuGAUCa -3'
miRNA:   3'- aCAAGGCGUa--GGCGCaaCGuGu-----UUAG- -5'
24178 3' -50 NC_005263.2 + 14203 0.67 0.89229
Target:  5'- cGUUCCGCgacggcgugccGUUCGCGc-GCaACGAAUCc -3'
miRNA:   3'- aCAAGGCG-----------UAGGCGCaaCG-UGUUUAG- -5'
24178 3' -50 NC_005263.2 + 8039 0.67 0.876524
Target:  5'- aGgcgUCCGCG-CCGUGgcgccGCGCGAGUUc -3'
miRNA:   3'- aCa--AGGCGUaGGCGCaa---CGUGUUUAG- -5'
24178 3' -50 NC_005263.2 + 19277 0.67 0.868215
Target:  5'- cGUUCCaggaGCG-CCGCG-UGCGCGucacGGUCa -3'
miRNA:   3'- aCAAGG----CGUaGGCGCaACGUGU----UUAG- -5'
24178 3' -50 NC_005263.2 + 11495 0.67 0.868215
Target:  5'- cUGcgCCGUcgCCuuGUUGCACuGGUCg -3'
miRNA:   3'- -ACaaGGCGuaGGcgCAACGUGuUUAG- -5'
24178 3' -50 NC_005263.2 + 25 0.68 0.841676
Target:  5'- ---gUCGCAUCUGCGUcacugGCGCGgcaGGUCg -3'
miRNA:   3'- acaaGGCGUAGGCGCAa----CGUGU---UUAG- -5'
24178 3' -50 NC_005263.2 + 37365 0.68 0.812927
Target:  5'- ---gCCGCAUgCGCG-UGCGCGAcugcAUCu -3'
miRNA:   3'- acaaGGCGUAgGCGCaACGUGUU----UAG- -5'
24178 3' -50 NC_005263.2 + 9530 0.68 0.812927
Target:  5'- cGUgagCGCGUCggacggcaaCGCGUcGCACAGGUCg -3'
miRNA:   3'- aCAag-GCGUAG---------GCGCAaCGUGUUUAG- -5'
24178 3' -50 NC_005263.2 + 2225 0.69 0.802903
Target:  5'- uUGUucgCCGCGUUCGCGUacGCGCcGAUg -3'
miRNA:   3'- -ACAa--GGCGUAGGCGCAa-CGUGuUUAg -5'
24178 3' -50 NC_005263.2 + 38921 0.69 0.760941
Target:  5'- cGUUgCGCAcCCGCGUcgcuucGCGCuGAUCg -3'
miRNA:   3'- aCAAgGCGUaGGCGCAa-----CGUGuUUAG- -5'
24178 3' -50 NC_005263.2 + 15586 0.7 0.727874
Target:  5'- aGUcgCCGCGUUCGaCGUgcugGCGCuuAUCg -3'
miRNA:   3'- aCAa-GGCGUAGGC-GCAa---CGUGuuUAG- -5'
24178 3' -50 NC_005263.2 + 37851 0.7 0.71662
Target:  5'- cGUUUCGCGaaCCGCG-UGCGcCGAAUCc -3'
miRNA:   3'- aCAAGGCGUa-GGCGCaACGU-GUUUAG- -5'
24178 3' -50 NC_005263.2 + 31250 0.7 0.71662
Target:  5'- gGUUCCGCGcggCGCGgcGCcggGCAGGUCg -3'
miRNA:   3'- aCAAGGCGUag-GCGCaaCG---UGUUUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.