miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24178 5' -57.2 NC_005263.2 + 1211 0.67 0.549826
Target:  5'- uCCGGCgucagaugCGCAUCgggGACGaGCGCGaUGu -3'
miRNA:   3'- -GGCCGaaa-----GCGUAG---CUGC-CGCGCcAC- -5'
24178 5' -57.2 NC_005263.2 + 29216 0.67 0.549826
Target:  5'- gCCGGCgcguaUUUGcCGUCGGCGcGCaGCGGc- -3'
miRNA:   3'- -GGCCGa----AAGC-GUAGCUGC-CG-CGCCac -5'
24178 5' -57.2 NC_005263.2 + 45153 0.67 0.549826
Target:  5'- cCUGGCUcUUgGCuUCGGCGGCgGCGaUGg -3'
miRNA:   3'- -GGCCGA-AAgCGuAGCUGCCG-CGCcAC- -5'
24178 5' -57.2 NC_005263.2 + 21183 0.67 0.539267
Target:  5'- gCCGGa---CGCGgacgCGcGCGGCGCGGg- -3'
miRNA:   3'- -GGCCgaaaGCGUa---GC-UGCCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 2645 0.67 0.528778
Target:  5'- aUCGcGCUUgccggCGUAUCGGCGGCGacacCGGc- -3'
miRNA:   3'- -GGC-CGAAa----GCGUAGCUGCCGC----GCCac -5'
24178 5' -57.2 NC_005263.2 + 24307 0.67 0.528778
Target:  5'- uUGGCUcgcgcgcgUCGCAUCGGCGGuCGUaacGGg- -3'
miRNA:   3'- gGCCGAa-------AGCGUAGCUGCC-GCG---CCac -5'
24178 5' -57.2 NC_005263.2 + 6615 0.67 0.528778
Target:  5'- uUCGGCgg-CGCGcu--CGGCGCGGUc -3'
miRNA:   3'- -GGCCGaaaGCGUagcuGCCGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 39349 0.67 0.528778
Target:  5'- gCUGGCagccgaUUCGCucggCGGCGGCGCGc-- -3'
miRNA:   3'- -GGCCGa-----AAGCGua--GCUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 36933 0.67 0.527733
Target:  5'- gCGGCUUaaccgcgugUCGCAgcCGGCcagcuaggcugcgGGCGCGGUu -3'
miRNA:   3'- gGCCGAA---------AGCGUa-GCUG-------------CCGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 39081 0.67 0.525646
Target:  5'- gCCGGCUcgccgUCGCG-CGGCacgaaaauccugugGGaCGUGGUGg -3'
miRNA:   3'- -GGCCGAa----AGCGUaGCUG--------------CC-GCGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 19370 0.67 0.518365
Target:  5'- aCCGGaug-CGCAuugccgucagccUCGGCGGCGCGc-- -3'
miRNA:   3'- -GGCCgaaaGCGU------------AGCUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 16417 0.67 0.518365
Target:  5'- gCGGUacUCgGCGUCGGCgcuGGCGCGGc- -3'
miRNA:   3'- gGCCGaaAG-CGUAGCUG---CCGCGCCac -5'
24178 5' -57.2 NC_005263.2 + 969 0.68 0.508035
Target:  5'- gCGGCggucgccugCGCGUCgGACGGCGCu--- -3'
miRNA:   3'- gGCCGaaa------GCGUAG-CUGCCGCGccac -5'
24178 5' -57.2 NC_005263.2 + 20983 0.68 0.508035
Target:  5'- gCGGCUgcgcgccugCGCGUCGACGuGC-CGGc- -3'
miRNA:   3'- gGCCGAaa-------GCGUAGCUGC-CGcGCCac -5'
24178 5' -57.2 NC_005263.2 + 22210 0.68 0.497793
Target:  5'- cCCGGggcaUUUCGUcgCGACG-UGCGGUa -3'
miRNA:   3'- -GGCCg---AAAGCGuaGCUGCcGCGCCAc -5'
24178 5' -57.2 NC_005263.2 + 23940 0.68 0.497793
Target:  5'- gCGGCUUgCGCGUCGugaGcGUGaCGGUGc -3'
miRNA:   3'- gGCCGAAaGCGUAGCug-C-CGC-GCCAC- -5'
24178 5' -57.2 NC_005263.2 + 16658 0.68 0.497793
Target:  5'- -aGGCgcUCGCGUCGuuCGGCGUGa-- -3'
miRNA:   3'- ggCCGaaAGCGUAGCu-GCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 25699 0.68 0.497793
Target:  5'- aCGGCga--GCA-CGGCGGCGCGu-- -3'
miRNA:   3'- gGCCGaaagCGUaGCUGCCGCGCcac -5'
24178 5' -57.2 NC_005263.2 + 47770 0.68 0.487644
Target:  5'- gCUGGCgcuugUCGCGcUCuGGCaGUGCGGUGc -3'
miRNA:   3'- -GGCCGaa---AGCGU-AG-CUGcCGCGCCAC- -5'
24178 5' -57.2 NC_005263.2 + 22511 0.68 0.477594
Target:  5'- cCCGGCgcacuccgUUGCgAUCagcgugacgGGCGGCGCGGa- -3'
miRNA:   3'- -GGCCGaa------AGCG-UAG---------CUGCCGCGCCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.