miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24179 3' -54.5 NC_005263.2 + 24808 0.66 0.715591
Target:  5'- --cCUGGCCGccguaaaacGGCGCCUGuCCCCAg- -3'
miRNA:   3'- guuGACUGGUa--------CUGCGGAU-GGGGUga -5'
24179 3' -54.5 NC_005263.2 + 10178 0.66 0.682473
Target:  5'- cCGGCUG-CCGgcgGcGCGCCUgcGCCCgGCUg -3'
miRNA:   3'- -GUUGACuGGUa--C-UGCGGA--UGGGgUGA- -5'
24179 3' -54.5 NC_005263.2 + 30809 0.66 0.682473
Target:  5'- -cGCgcGCCGUGGCGaCUGCCUCGCg -3'
miRNA:   3'- guUGacUGGUACUGCgGAUGGGGUGa -5'
24179 3' -54.5 NC_005263.2 + 12737 0.66 0.671318
Target:  5'- cUAACUGGCacugcGACGUCUGCgCUCACg -3'
miRNA:   3'- -GUUGACUGgua--CUGCGGAUG-GGGUGa -5'
24179 3' -54.5 NC_005263.2 + 23548 0.67 0.637666
Target:  5'- -uGCcGACCGUGGCGCa-GCCgCCGCc -3'
miRNA:   3'- guUGaCUGGUACUGCGgaUGG-GGUGa -5'
24179 3' -54.5 NC_005263.2 + 22569 0.68 0.603965
Target:  5'- aUAGCUGAUCGUG-CGCuCUGCgCCAa- -3'
miRNA:   3'- -GUUGACUGGUACuGCG-GAUGgGGUga -5'
24179 3' -54.5 NC_005263.2 + 15205 0.68 0.581607
Target:  5'- uCAGCgGGCCGccGACGCCgACgCCACg -3'
miRNA:   3'- -GUUGaCUGGUa-CUGCGGaUGgGGUGa -5'
24179 3' -54.5 NC_005263.2 + 38721 0.68 0.548418
Target:  5'- gCAGCUGGCCGccGCGCUgaaauUCCCGCa -3'
miRNA:   3'- -GUUGACUGGUacUGCGGau---GGGGUGa -5'
24179 3' -54.5 NC_005263.2 + 35592 0.69 0.537483
Target:  5'- --uCUGACCG-GGCGCaaaCUGCCCCAa- -3'
miRNA:   3'- guuGACUGGUaCUGCG---GAUGGGGUga -5'
24179 3' -54.5 NC_005263.2 + 9253 0.7 0.473702
Target:  5'- -uGCcGACCGUGACGCCgcucgAgUCCGCg -3'
miRNA:   3'- guUGaCUGGUACUGCGGa----UgGGGUGa -5'
24179 3' -54.5 NC_005263.2 + 20177 0.77 0.172249
Target:  5'- -uACUGcACCAUGACGCCUA-UCCGCUa -3'
miRNA:   3'- guUGAC-UGGUACUGCGGAUgGGGUGA- -5'
24179 3' -54.5 NC_005263.2 + 21105 1.07 0.00122
Target:  5'- aCAACUGACCAUGACGCCUACCCCACUu -3'
miRNA:   3'- -GUUGACUGGUACUGCGGAUGGGGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.