miRNA display CGI


Results 1 - 20 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24179 5' -54.2 NC_005263.2 + 21662 0.66 0.765268
Target:  5'- cGCA-CCAAGCGCUGcugcagauUCGC-AUCGACc -3'
miRNA:   3'- -CGUcGGUUCGCGAU--------AGUGcUGGCUGc -5'
24179 5' -54.2 NC_005263.2 + 47660 0.66 0.765268
Target:  5'- uCAGCgGGGCuCUAUUACGuCgCGGCGa -3'
miRNA:   3'- cGUCGgUUCGcGAUAGUGCuG-GCUGC- -5'
24179 5' -54.2 NC_005263.2 + 27227 0.66 0.765268
Target:  5'- cGCcGCUcguGAGCGUgAUCGCGccGCCGGCc -3'
miRNA:   3'- -CGuCGG---UUCGCGaUAGUGC--UGGCUGc -5'
24179 5' -54.2 NC_005263.2 + 31306 0.66 0.765268
Target:  5'- cGCuAGCCuucauCGCaacgAUCACGuCCGGCGa -3'
miRNA:   3'- -CG-UCGGuuc--GCGa---UAGUGCuGGCUGC- -5'
24179 5' -54.2 NC_005263.2 + 41645 0.66 0.765268
Target:  5'- uGCGGCCcacGCGCUcgCuCGugcuCUGGCGg -3'
miRNA:   3'- -CGUCGGuu-CGCGAuaGuGCu---GGCUGC- -5'
24179 5' -54.2 NC_005263.2 + 15054 0.66 0.765268
Target:  5'- uGCAGCuCGAaaccGUGCUGUC--GACCGAgGa -3'
miRNA:   3'- -CGUCG-GUU----CGCGAUAGugCUGGCUgC- -5'
24179 5' -54.2 NC_005263.2 + 38239 0.66 0.765268
Target:  5'- aGC-GCCGAGgacaacgaGCUgaAUC-CGGCCGGCGg -3'
miRNA:   3'- -CGuCGGUUCg-------CGA--UAGuGCUGGCUGC- -5'
24179 5' -54.2 NC_005263.2 + 15177 0.66 0.754877
Target:  5'- cGCAGUgaucgacgCGAGCGCgccgCGCGACguCGGCa -3'
miRNA:   3'- -CGUCG--------GUUCGCGaua-GUGCUG--GCUGc -5'
24179 5' -54.2 NC_005263.2 + 30297 0.66 0.754877
Target:  5'- --cGCgAcAGCGCcgggCGCGGCCGGCGu -3'
miRNA:   3'- cguCGgU-UCGCGaua-GUGCUGGCUGC- -5'
24179 5' -54.2 NC_005263.2 + 43079 0.66 0.754877
Target:  5'- gGCcGCCGGGCcgGCUGUCGa-GCgCGGCGg -3'
miRNA:   3'- -CGuCGGUUCG--CGAUAGUgcUG-GCUGC- -5'
24179 5' -54.2 NC_005263.2 + 33151 0.66 0.754877
Target:  5'- cCAGCCAugAGCGCggcgccuugcAUCGCGACgGGg- -3'
miRNA:   3'- cGUCGGU--UCGCGa---------UAGUGCUGgCUgc -5'
24179 5' -54.2 NC_005263.2 + 7016 0.66 0.754877
Target:  5'- uCAGCUuuuGuUGCaUGUCGCGcGCCGACGg -3'
miRNA:   3'- cGUCGGuu-C-GCG-AUAGUGC-UGGCUGC- -5'
24179 5' -54.2 NC_005263.2 + 29577 0.66 0.754877
Target:  5'- cGCGGCgCGAGcCGCUuugaucgcguccAUCGCGAuCCGGu- -3'
miRNA:   3'- -CGUCG-GUUC-GCGA------------UAGUGCU-GGCUgc -5'
24179 5' -54.2 NC_005263.2 + 35755 0.66 0.74858
Target:  5'- cGCGGCgCGAGaCGCUugaggaaaccggcCACG-CCGGCGa -3'
miRNA:   3'- -CGUCG-GUUC-GCGAua-----------GUGCuGGCUGC- -5'
24179 5' -54.2 NC_005263.2 + 21389 0.66 0.744358
Target:  5'- uGC-GCUucGCGCUGcCGCaGGCCGGCc -3'
miRNA:   3'- -CGuCGGuuCGCGAUaGUG-CUGGCUGc -5'
24179 5' -54.2 NC_005263.2 + 45466 0.66 0.744358
Target:  5'- -gAGCCcGGCGCgaacgugccgAUCGCGAUCuACGa -3'
miRNA:   3'- cgUCGGuUCGCGa---------UAGUGCUGGcUGC- -5'
24179 5' -54.2 NC_005263.2 + 33785 0.66 0.744358
Target:  5'- uGCGGCaguAGCGCUucccGUCaACG-UCGACGu -3'
miRNA:   3'- -CGUCGgu-UCGCGA----UAG-UGCuGGCUGC- -5'
24179 5' -54.2 NC_005263.2 + 3993 0.66 0.744358
Target:  5'- cGCcGCCGAGCaGCg--CACcuGACCGAUc -3'
miRNA:   3'- -CGuCGGUUCG-CGauaGUG--CUGGCUGc -5'
24179 5' -54.2 NC_005263.2 + 10193 0.66 0.744358
Target:  5'- aGCAgGCCgAAGCGCUcgC-CGGCCu-CGg -3'
miRNA:   3'- -CGU-CGG-UUCGCGAuaGuGCUGGcuGC- -5'
24179 5' -54.2 NC_005263.2 + 41753 0.66 0.744358
Target:  5'- gGCGGCacGGCGCgAUCAacgaggaGAUCGGCGc -3'
miRNA:   3'- -CGUCGguUCGCGaUAGUg------CUGGCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.