miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24181 5' -56.1 NC_005263.2 + 27536 0.66 0.625469
Target:  5'- cGUCgGCACGgCCGGcAGGCCgggcacgAGCGUc -3'
miRNA:   3'- -UAGgUGUGUgGGCC-UCUGGa------UUGCGa -5'
24181 5' -56.1 NC_005263.2 + 28797 0.67 0.569982
Target:  5'- -aCCGCACAgCCGGcGGGCC--GCGUUu -3'
miRNA:   3'- uaGGUGUGUgGGCC-UCUGGauUGCGA- -5'
24181 5' -56.1 NC_005263.2 + 19106 0.67 0.54809
Target:  5'- --aCGCACugCCGGucGGCCgcgccgAGCGCa -3'
miRNA:   3'- uagGUGUGugGGCCu-CUGGa-----UUGCGa -5'
24181 5' -56.1 NC_005263.2 + 36857 0.68 0.500961
Target:  5'- -gUCGCACGCCCGGcggucgagaauucGACCcgGGCGCg -3'
miRNA:   3'- uaGGUGUGUGGGCCu------------CUGGa-UUGCGa -5'
24181 5' -56.1 NC_005263.2 + 9469 0.68 0.484262
Target:  5'- -gCgGCGCGCCCGGcuGCagCUGACGCUu -3'
miRNA:   3'- uaGgUGUGUGGGCCucUG--GAUUGCGA- -5'
24181 5' -56.1 NC_005263.2 + 26040 0.68 0.473961
Target:  5'- -aCCACgACACCCGG-GAUCgu-CGCg -3'
miRNA:   3'- uaGGUG-UGUGGGCCuCUGGauuGCGa -5'
24181 5' -56.1 NC_005263.2 + 28804 0.68 0.473961
Target:  5'- cAUCCGgGCGCgucaCGGuGACCgUGACGCg -3'
miRNA:   3'- -UAGGUgUGUGg---GCCuCUGG-AUUGCGa -5'
24181 5' -56.1 NC_005263.2 + 3904 0.68 0.457713
Target:  5'- cUUCGCACccucggugucuuucuGCaCCGGcAGGCCUAGCGCc -3'
miRNA:   3'- uAGGUGUG---------------UG-GGCC-UCUGGAUUGCGa -5'
24181 5' -56.1 NC_005263.2 + 21154 0.7 0.385831
Target:  5'- aGUCCG-ACACCCGGcggcuacgccacgGGGCCgGACGCg -3'
miRNA:   3'- -UAGGUgUGUGGGCC-------------UCUGGaUUGCGa -5'
24181 5' -56.1 NC_005263.2 + 19516 0.7 0.360105
Target:  5'- cUgCACACGUCCGGcGACCUggUGCUg -3'
miRNA:   3'- uAgGUGUGUGGGCCuCUGGAuuGCGA- -5'
24181 5' -56.1 NC_005263.2 + 20843 1.06 0.001006
Target:  5'- cAUCCACACACCCGGAGACCUAACGCUa -3'
miRNA:   3'- -UAGGUGUGUGGGCCUCUGGAUUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.