Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24184 | 3' | -50.9 | NC_005263.2 | + | 38565 | 0.77 | 0.296079 |
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Target: 5'- -cGCGAgCGcCGCGUCGGUCGCUgccGCg -3' miRNA: 3'- aaCGCUaGCuGUGCAGCUAGCGAa--UG- -5' |
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| 24184 | 3' | -50.9 | NC_005263.2 | + | 39025 | 0.66 | 0.884723 |
|
Target: 5'- -gGcCGAUCGacccgaacugGCACGUCGAggCGC-UACa -3' miRNA: 3'- aaC-GCUAGC----------UGUGCAGCUa-GCGaAUG- -5' |
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| 24184 | 3' | -50.9 | NC_005263.2 | + | 40977 | 0.67 | 0.8236 |
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Target: 5'- -cGCGA-CGcCACaGUCGGUCGCacgGCa -3' miRNA: 3'- aaCGCUaGCuGUG-CAGCUAGCGaa-UG- -5' |
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| 24184 | 3' | -50.9 | NC_005263.2 | + | 41173 | 0.69 | 0.718709 |
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Target: 5'- -gGCGGccgucgUCGAUACGUUGcgCGCUgUGCg -3' miRNA: 3'- aaCGCU------AGCUGUGCAGCuaGCGA-AUG- -5' |
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| 24184 | 3' | -50.9 | NC_005263.2 | + | 42758 | 0.7 | 0.673387 |
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Target: 5'- -cGCGAUaCGGCACGUgGuuUCGCggUGCu -3' miRNA: 3'- aaCGCUA-GCUGUGCAgCu-AGCGa-AUG- -5' |
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| 24184 | 3' | -50.9 | NC_005263.2 | + | 43252 | 0.69 | 0.729837 |
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Target: 5'- -aGCGGcaUCGGCACGgCGcgCGCgUACg -3' miRNA: 3'- aaCGCU--AGCUGUGCaGCuaGCGaAUG- -5' |
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| 24184 | 3' | -50.9 | NC_005263.2 | + | 44654 | 0.69 | 0.740858 |
|
Target: 5'- cUGCGccUCGAUGCGUCGcgCGCg--- -3' miRNA: 3'- aACGCu-AGCUGUGCAGCuaGCGaaug -5' |
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| 24184 | 3' | -50.9 | NC_005263.2 | + | 46091 | 0.66 | 0.876781 |
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Target: 5'- aUGCGGcCGugACGUCGGguaucauccgCGCcgGCg -3' miRNA: 3'- aACGCUaGCugUGCAGCUa---------GCGaaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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