Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24184 | 3' | -50.9 | NC_005263.2 | + | 24408 | 0.66 | 0.899753 |
Target: 5'- gUGCGGUC---AUGUCGAUCGCcucACg -3' miRNA: 3'- aACGCUAGcugUGCAGCUAGCGaa-UG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 23406 | 0.66 | 0.876781 |
Target: 5'- aUGCGAUUGcC-CGUCGAUcaacgCGCUcaUGCg -3' miRNA: 3'- aACGCUAGCuGuGCAGCUA-----GCGA--AUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 20779 | 0.7 | 0.696184 |
Target: 5'- -cGCGccgcugaucGUCGGCGCGUCgGGUCGCg--- -3' miRNA: 3'- aaCGC---------UAGCUGUGCAG-CUAGCGaaug -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 20007 | 1.08 | 0.002484 |
Target: 5'- cUUGCGAUCGACACGUCGAUCGCUUACa -3' miRNA: 3'- -AACGCUAGCUGUGCAGCUAGCGAAUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 19741 | 0.71 | 0.604353 |
Target: 5'- aUGCGAUCGGCGC-UgGcgCGCUgGCg -3' miRNA: 3'- aACGCUAGCUGUGcAgCuaGCGAaUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 19620 | 0.66 | 0.876781 |
Target: 5'- -aGCGAacgccUCGuACGCGUUGAUgGCUg-- -3' miRNA: 3'- aaCGCU-----AGC-UGUGCAGCUAgCGAaug -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 19111 | 0.66 | 0.865197 |
Target: 5'- cUGcCGGUCGGcCGCGcCGAgcgcaucgccgggCGCUUGCg -3' miRNA: 3'- aAC-GCUAGCU-GUGCaGCUa------------GCGAAUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 18518 | 0.74 | 0.439861 |
Target: 5'- -cGCGAUCGGCgGCGUCGAcacCGCgaGCg -3' miRNA: 3'- aaCGCUAGCUG-UGCAGCUa--GCGaaUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 17498 | 0.78 | 0.25243 |
Target: 5'- -cGCGcgCGGCGCGUCGAUCGaucagGCg -3' miRNA: 3'- aaCGCuaGCUGUGCAGCUAGCgaa--UG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 16807 | 0.67 | 0.833076 |
Target: 5'- gUUGCGAUgaaGGCuaGCGUCGAcgCGCUcgACg -3' miRNA: 3'- -AACGCUAg--CUG--UGCAGCUa-GCGAa-UG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 15991 | 0.69 | 0.740858 |
Target: 5'- -cGUGAUCGAUcucgaaGCGcUCGAUCGCa--- -3' miRNA: 3'- aaCGCUAGCUG------UGC-AGCUAGCGaaug -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 15658 | 0.66 | 0.860072 |
Target: 5'- -cGCGAUCGuCGCGUCGGacacguucuuUcCGCUgACc -3' miRNA: 3'- aaCGCUAGCuGUGCAGCU----------A-GCGAaUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 15339 | 0.77 | 0.320016 |
Target: 5'- --aUGAUCGACuuuGCGUCGGUCGCaUUGCg -3' miRNA: 3'- aacGCUAGCUG---UGCAGCUAGCG-AAUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 14298 | 0.67 | 0.833076 |
Target: 5'- -cGCGAUCGuCAugcCGUCGA-CGCUa-- -3' miRNA: 3'- aaCGCUAGCuGU---GCAGCUaGCGAaug -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 13192 | 0.72 | 0.547422 |
Target: 5'- -cGCGcAUCGACAgGUCGAcauUCGCgccagGCg -3' miRNA: 3'- aaCGC-UAGCUGUgCAGCU---AGCGaa---UG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 12680 | 0.66 | 0.899753 |
Target: 5'- -cGgGGUCGucguuCGCGUCGA--GCUUGCc -3' miRNA: 3'- aaCgCUAGCu----GUGCAGCUagCGAAUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 9766 | 0.66 | 0.884723 |
Target: 5'- -cGcCGGUCGcCGCGUgcaCGGUCGCgcGCg -3' miRNA: 3'- aaC-GCUAGCuGUGCA---GCUAGCGaaUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 9728 | 0.66 | 0.860072 |
Target: 5'- cUUGCGcUCGuucgccacaGCAgUGUCGAUCGCggUGCg -3' miRNA: 3'- -AACGCuAGC---------UGU-GCAGCUAGCGa-AUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 9596 | 0.71 | 0.638902 |
Target: 5'- -gGCGAccugCGACACGUCGA-CGCcgaucUGCg -3' miRNA: 3'- aaCGCUa---GCUGUGCAGCUaGCGa----AUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 8705 | 0.68 | 0.803998 |
Target: 5'- gUGCGG-CGACAgGUCGGccgcguccaUCGCgUACu -3' miRNA: 3'- aACGCUaGCUGUgCAGCU---------AGCGaAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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