miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24184 3' -50.9 NC_005263.2 + 14298 0.67 0.833076
Target:  5'- -cGCGAUCGuCAugcCGUCGA-CGCUa-- -3'
miRNA:   3'- aaCGCUAGCuGU---GCAGCUaGCGAaug -5'
24184 3' -50.9 NC_005263.2 + 16807 0.67 0.833076
Target:  5'- gUUGCGAUgaaGGCuaGCGUCGAcgCGCUcgACg -3'
miRNA:   3'- -AACGCUAg--CUG--UGCAGCUa-GCGAa-UG- -5'
24184 3' -50.9 NC_005263.2 + 40977 0.67 0.8236
Target:  5'- -cGCGA-CGcCACaGUCGGUCGCacgGCa -3'
miRNA:   3'- aaCGCUaGCuGUG-CAGCUAGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 8705 0.68 0.803998
Target:  5'- gUGCGG-CGACAgGUCGGccgcguccaUCGCgUACu -3'
miRNA:   3'- aACGCUaGCUGUgCAGCU---------AGCGaAUG- -5'
24184 3' -50.9 NC_005263.2 + 32890 0.68 0.762525
Target:  5'- -gGCGAguuUCGugGCGUCGG-CGUcgGCg -3'
miRNA:   3'- aaCGCU---AGCugUGCAGCUaGCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 25167 0.69 0.751758
Target:  5'- -cGUGAUCGACuCGcCGGUCGgaUUUGCg -3'
miRNA:   3'- aaCGCUAGCUGuGCaGCUAGC--GAAUG- -5'
24184 3' -50.9 NC_005263.2 + 44654 0.69 0.740858
Target:  5'- cUGCGccUCGAUGCGUCGcgCGCg--- -3'
miRNA:   3'- aACGCu-AGCUGUGCAGCuaGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 15991 0.69 0.740858
Target:  5'- -cGUGAUCGAUcucgaaGCGcUCGAUCGCa--- -3'
miRNA:   3'- aaCGCUAGCUG------UGC-AGCUAGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 31289 0.69 0.729837
Target:  5'- -cGCG-UCGAgCGCGUCGA-CGCUaGCc -3'
miRNA:   3'- aaCGCuAGCU-GUGCAGCUaGCGAaUG- -5'
24184 3' -50.9 NC_005263.2 + 43252 0.69 0.729837
Target:  5'- -aGCGGcaUCGGCACGgCGcgCGCgUACg -3'
miRNA:   3'- aaCGCU--AGCUGUGCaGCuaGCGaAUG- -5'
24184 3' -50.9 NC_005263.2 + 41173 0.69 0.718709
Target:  5'- -gGCGGccgucgUCGAUACGUUGcgCGCUgUGCg -3'
miRNA:   3'- aaCGCU------AGCUGUGCAGCuaGCGA-AUG- -5'
24184 3' -50.9 NC_005263.2 + 20779 0.7 0.696184
Target:  5'- -cGCGccgcugaucGUCGGCGCGUCgGGUCGCg--- -3'
miRNA:   3'- aaCGC---------UAGCUGUGCAG-CUAGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 42758 0.7 0.673387
Target:  5'- -cGCGAUaCGGCACGUgGuuUCGCggUGCu -3'
miRNA:   3'- aaCGCUA-GCUGUGCAgCu-AGCGa-AUG- -5'
24184 3' -50.9 NC_005263.2 + 7416 0.7 0.650419
Target:  5'- aUGCGGgagaUCGGCGCGUCGAgcagguagCGCa--- -3'
miRNA:   3'- aACGCU----AGCUGUGCAGCUa-------GCGaaug -5'
24184 3' -50.9 NC_005263.2 + 971 0.7 0.650419
Target:  5'- -gGCGGUCGccuGCGCGUCGGacggCGCUUc- -3'
miRNA:   3'- aaCGCUAGC---UGUGCAGCUa---GCGAAug -5'
24184 3' -50.9 NC_005263.2 + 9596 0.71 0.638902
Target:  5'- -gGCGAccugCGACACGUCGA-CGCcgaucUGCg -3'
miRNA:   3'- aaCGCUa---GCUGUGCAGCUaGCGa----AUG- -5'
24184 3' -50.9 NC_005263.2 + 2639 0.71 0.615858
Target:  5'- -cGCGAUCGGCACGUUcg-CGCcggGCu -3'
miRNA:   3'- aaCGCUAGCUGUGCAGcuaGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 19741 0.71 0.604353
Target:  5'- aUGCGAUCGGCGC-UgGcgCGCUgGCg -3'
miRNA:   3'- aACGCUAGCUGUGcAgCuaGCGAaUG- -5'
24184 3' -50.9 NC_005263.2 + 29589 0.71 0.604353
Target:  5'- -cGCGGugUCGACGcCGcCGAUCGCgagGCg -3'
miRNA:   3'- aaCGCU--AGCUGU-GCaGCUAGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 5459 0.72 0.581434
Target:  5'- -aGCGAUCGGuugcCACGUCGG-CGCUg-- -3'
miRNA:   3'- aaCGCUAGCU----GUGCAGCUaGCGAaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.