miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24184 5' -54.8 NC_005263.2 + 10660 0.66 0.728387
Target:  5'- gACGCGAUucGGAUCGaGGCccaGGUCGg--- -3'
miRNA:   3'- -UGCGUUA--CCUAGCgCCG---CCAGCaagu -5'
24184 5' -54.8 NC_005263.2 + 27158 0.66 0.717621
Target:  5'- cCGCGAUGGugucguugaaCGUGGuCGGcgCGUUCAc -3'
miRNA:   3'- uGCGUUACCua--------GCGCC-GCCa-GCAAGU- -5'
24184 5' -54.8 NC_005263.2 + 6630 0.66 0.706769
Target:  5'- gGCGCGGUcGAgcagUCGCGcGuCGGUCGcUUCAc -3'
miRNA:   3'- -UGCGUUAcCU----AGCGC-C-GCCAGC-AAGU- -5'
24184 5' -54.8 NC_005263.2 + 20801 0.66 0.700221
Target:  5'- gACGCAAUGGGUCaaguuccuggccggcGCGGCaGGUa--UCGa -3'
miRNA:   3'- -UGCGUUACCUAG---------------CGCCG-CCAgcaAGU- -5'
24184 5' -54.8 NC_005263.2 + 14099 0.67 0.651615
Target:  5'- -gGUAccGGcugCGCGGCGGUCGccgUCGc -3'
miRNA:   3'- ugCGUuaCCua-GCGCCGCCAGCa--AGU- -5'
24184 5' -54.8 NC_005263.2 + 38617 0.67 0.650503
Target:  5'- cACGCGAUGGAUagCGcCGGCGcgaaugaagccgcGUCGcgCAu -3'
miRNA:   3'- -UGCGUUACCUA--GC-GCCGC-------------CAGCaaGU- -5'
24184 5' -54.8 NC_005263.2 + 6964 0.68 0.58713
Target:  5'- cGCGCGAacgccgguuuccGGAucUCGCGGCGaaguucggcgaugacGUCGUUCAg -3'
miRNA:   3'- -UGCGUUa-----------CCU--AGCGCCGC---------------CAGCAAGU- -5'
24184 5' -54.8 NC_005263.2 + 26198 0.68 0.584919
Target:  5'- cGCGCGGcGGccgcgcgaUGCGGCGGcCGUUCGc -3'
miRNA:   3'- -UGCGUUaCCua------GCGCCGCCaGCAAGU- -5'
24184 5' -54.8 NC_005263.2 + 20648 0.69 0.530344
Target:  5'- cCGCAGUGGccgcgccgcucGUCGCGGCcGUCGa--- -3'
miRNA:   3'- uGCGUUACC-----------UAGCGCCGcCAGCaagu -5'
24184 5' -54.8 NC_005263.2 + 39394 0.69 0.530344
Target:  5'- uACGCGAUGGA-CGCGGCcgaccuGUCGccgCAc -3'
miRNA:   3'- -UGCGUUACCUaGCGCCGc-----CAGCaa-GU- -5'
24184 5' -54.8 NC_005263.2 + 22765 0.7 0.475684
Target:  5'- aACGCGAUGGcgaccugcccgaggcUCGUGaacauggugucgaaGCGGUCGUUCAu -3'
miRNA:   3'- -UGCGUUACCu--------------AGCGC--------------CGCCAGCAAGU- -5'
24184 5' -54.8 NC_005263.2 + 32029 0.7 0.457417
Target:  5'- aGCGCAaAUGGAacgaUCGCGGCGGcacggacgUGUUUg -3'
miRNA:   3'- -UGCGU-UACCU----AGCGCCGCCa-------GCAAGu -5'
24184 5' -54.8 NC_005263.2 + 13953 0.71 0.427833
Target:  5'- aGCGCAuaGGA-CGCGGCGcG-CGUUCGc -3'
miRNA:   3'- -UGCGUuaCCUaGCGCCGC-CaGCAAGU- -5'
24184 5' -54.8 NC_005263.2 + 36833 0.72 0.343811
Target:  5'- cGCGCAcgaucauuccgggaAUGGGUCGCacgcccGGCGGUCGagaaUUCGa -3'
miRNA:   3'- -UGCGU--------------UACCUAGCG------CCGCCAGC----AAGU- -5'
24184 5' -54.8 NC_005263.2 + 20042 1.08 0.001059
Target:  5'- cACGCAAUGGAUCGCGGCGGUCGUUCAg -3'
miRNA:   3'- -UGCGUUACCUAGCGCCGCCAGCAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.