Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24184 | 5' | -54.8 | NC_005263.2 | + | 10660 | 0.66 | 0.728387 |
Target: 5'- gACGCGAUucGGAUCGaGGCccaGGUCGg--- -3' miRNA: 3'- -UGCGUUA--CCUAGCgCCG---CCAGCaagu -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 27158 | 0.66 | 0.717621 |
Target: 5'- cCGCGAUGGugucguugaaCGUGGuCGGcgCGUUCAc -3' miRNA: 3'- uGCGUUACCua--------GCGCC-GCCa-GCAAGU- -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 6630 | 0.66 | 0.706769 |
Target: 5'- gGCGCGGUcGAgcagUCGCGcGuCGGUCGcUUCAc -3' miRNA: 3'- -UGCGUUAcCU----AGCGC-C-GCCAGC-AAGU- -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 14099 | 0.67 | 0.651615 |
Target: 5'- -gGUAccGGcugCGCGGCGGUCGccgUCGc -3' miRNA: 3'- ugCGUuaCCua-GCGCCGCCAGCa--AGU- -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 6964 | 0.68 | 0.58713 |
Target: 5'- cGCGCGAacgccgguuuccGGAucUCGCGGCGaaguucggcgaugacGUCGUUCAg -3' miRNA: 3'- -UGCGUUa-----------CCU--AGCGCCGC---------------CAGCAAGU- -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 20648 | 0.69 | 0.530344 |
Target: 5'- cCGCAGUGGccgcgccgcucGUCGCGGCcGUCGa--- -3' miRNA: 3'- uGCGUUACC-----------UAGCGCCGcCAGCaagu -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 22765 | 0.7 | 0.475684 |
Target: 5'- aACGCGAUGGcgaccugcccgaggcUCGUGaacauggugucgaaGCGGUCGUUCAu -3' miRNA: 3'- -UGCGUUACCu--------------AGCGC--------------CGCCAGCAAGU- -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 13953 | 0.71 | 0.427833 |
Target: 5'- aGCGCAuaGGA-CGCGGCGcG-CGUUCGc -3' miRNA: 3'- -UGCGUuaCCUaGCGCCGC-CaGCAAGU- -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 20042 | 1.08 | 0.001059 |
Target: 5'- cACGCAAUGGAUCGCGGCGGUCGUUCAg -3' miRNA: 3'- -UGCGUUACCUAGCGCCGCCAGCAAGU- -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 36833 | 0.72 | 0.343811 |
Target: 5'- cGCGCAcgaucauuccgggaAUGGGUCGCacgcccGGCGGUCGagaaUUCGa -3' miRNA: 3'- -UGCGU--------------UACCUAGCG------CCGCCAGC----AAGU- -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 32029 | 0.7 | 0.457417 |
Target: 5'- aGCGCAaAUGGAacgaUCGCGGCGGcacggacgUGUUUg -3' miRNA: 3'- -UGCGU-UACCU----AGCGCCGCCa-------GCAAGu -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 39394 | 0.69 | 0.530344 |
Target: 5'- uACGCGAUGGA-CGCGGCcgaccuGUCGccgCAc -3' miRNA: 3'- -UGCGUUACCUaGCGCCGc-----CAGCaa-GU- -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 26198 | 0.68 | 0.584919 |
Target: 5'- cGCGCGGcGGccgcgcgaUGCGGCGGcCGUUCGc -3' miRNA: 3'- -UGCGUUaCCua------GCGCCGCCaGCAAGU- -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 38617 | 0.67 | 0.650503 |
Target: 5'- cACGCGAUGGAUagCGcCGGCGcgaaugaagccgcGUCGcgCAu -3' miRNA: 3'- -UGCGUUACCUA--GC-GCCGC-------------CAGCaaGU- -5' |
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24184 | 5' | -54.8 | NC_005263.2 | + | 20801 | 0.66 | 0.700221 |
Target: 5'- gACGCAAUGGGUCaaguuccuggccggcGCGGCaGGUa--UCGa -3' miRNA: 3'- -UGCGUUACCUAG---------------CGCCG-CCAgcaAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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