miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24186 3' -57.8 NC_005263.2 + 25588 0.66 0.598901
Target:  5'- uCGGCAUCGAgcaGGCCGCAgccGCCg -3'
miRNA:   3'- cGCUGUGGCUaggCUGGCGUaccCGG- -5'
24186 3' -57.8 NC_005263.2 + 21837 0.66 0.598901
Target:  5'- gGCGcaaaGCGCC-AUCuUGGgCGCaAUGGGCCg -3'
miRNA:   3'- -CGC----UGUGGcUAG-GCUgGCG-UACCCGG- -5'
24186 3' -57.8 NC_005263.2 + 37217 0.66 0.598901
Target:  5'- gGCGAuaCGCCGcUCaCGACgCGCGccGGuGCCg -3'
miRNA:   3'- -CGCU--GUGGCuAG-GCUG-GCGUa-CC-CGG- -5'
24186 3' -57.8 NC_005263.2 + 12964 0.66 0.588182
Target:  5'- cGCGACAgCGAgaaaUCGGCCGUu--GGCUu -3'
miRNA:   3'- -CGCUGUgGCUa---GGCUGGCGuacCCGG- -5'
24186 3' -57.8 NC_005263.2 + 41920 0.66 0.588182
Target:  5'- aGCaGC-CCGaAUUCGACCuGCGcgugauucUGGGCCu -3'
miRNA:   3'- -CGcUGuGGC-UAGGCUGG-CGU--------ACCCGG- -5'
24186 3' -57.8 NC_005263.2 + 34018 0.66 0.588182
Target:  5'- cGCGGCGCgCGAUCCagaGCUGC-UGcGGUg -3'
miRNA:   3'- -CGCUGUG-GCUAGGc--UGGCGuAC-CCGg -5'
24186 3' -57.8 NC_005263.2 + 11894 0.66 0.577497
Target:  5'- cGCGGCGCCGGgcgCCuGCgCGC-UGGcGUCc -3'
miRNA:   3'- -CGCUGUGGCUa--GGcUG-GCGuACC-CGG- -5'
24186 3' -57.8 NC_005263.2 + 20779 0.66 0.577497
Target:  5'- cGCGcCGCUGAUCguCGG-CGCGUcGGGUCg -3'
miRNA:   3'- -CGCuGUGGCUAG--GCUgGCGUA-CCCGG- -5'
24186 3' -57.8 NC_005263.2 + 42316 0.66 0.577497
Target:  5'- aCGAgAaagCGA-CCGGCCGCAaGGuGCCg -3'
miRNA:   3'- cGCUgUg--GCUaGGCUGGCGUaCC-CGG- -5'
24186 3' -57.8 NC_005263.2 + 37935 0.66 0.577497
Target:  5'- cGCGcCGCCGGcagCCgGugCGCAaccGGCCg -3'
miRNA:   3'- -CGCuGUGGCUa--GG-CugGCGUac-CCGG- -5'
24186 3' -57.8 NC_005263.2 + 18811 0.66 0.577497
Target:  5'- uGCGcAUGCCGAcCCGGCCGcCGUGcagcucauuGCCg -3'
miRNA:   3'- -CGC-UGUGGCUaGGCUGGC-GUACc--------CGG- -5'
24186 3' -57.8 NC_005263.2 + 27321 0.66 0.566857
Target:  5'- cGCGAC-CCGAcgcgCCGACgaucaGCGgcgcGGCCa -3'
miRNA:   3'- -CGCUGuGGCUa---GGCUGg----CGUac--CCGG- -5'
24186 3' -57.8 NC_005263.2 + 39815 0.66 0.566857
Target:  5'- aGUGGa--CGAUCCGACCGaCGccgcucgcgcUGuGGCCg -3'
miRNA:   3'- -CGCUgugGCUAGGCUGGC-GU----------AC-CCGG- -5'
24186 3' -57.8 NC_005263.2 + 2767 0.66 0.566857
Target:  5'- cGCGACcgACCGGcaUCaCGACCucGCGaccGGGCUg -3'
miRNA:   3'- -CGCUG--UGGCU--AG-GCUGG--CGUa--CCCGG- -5'
24186 3' -57.8 NC_005263.2 + 34699 0.66 0.566857
Target:  5'- -aGGCGCCGG-CCGugguCUGCAaaccauUGGGCg -3'
miRNA:   3'- cgCUGUGGCUaGGCu---GGCGU------ACCCGg -5'
24186 3' -57.8 NC_005263.2 + 13282 0.66 0.556266
Target:  5'- cCGACACCGA-CUGG-CGCGUGcgcaGCCa -3'
miRNA:   3'- cGCUGUGGCUaGGCUgGCGUACc---CGG- -5'
24186 3' -57.8 NC_005263.2 + 32415 0.66 0.556266
Target:  5'- aGUcGCugCGAgcucgCCGGCCGCucuUGGcacGCCa -3'
miRNA:   3'- -CGcUGugGCUa----GGCUGGCGu--ACC---CGG- -5'
24186 3' -57.8 NC_005263.2 + 15811 0.66 0.545734
Target:  5'- cGUGACacucgucaagACCGGcUCCGACCuggcgcgcuucGCGUGGcucGCCg -3'
miRNA:   3'- -CGCUG----------UGGCU-AGGCUGG-----------CGUACC---CGG- -5'
24186 3' -57.8 NC_005263.2 + 33676 0.66 0.545734
Target:  5'- cGCGcGCGCacg-CCG-UCGCAUGGGUCu -3'
miRNA:   3'- -CGC-UGUGgcuaGGCuGGCGUACCCGG- -5'
24186 3' -57.8 NC_005263.2 + 39780 0.66 0.545734
Target:  5'- -aGACugCucgauGGUCUG-CCGCAUcaaGGGCCu -3'
miRNA:   3'- cgCUGugG-----CUAGGCuGGCGUA---CCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.