miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24186 3' -57.8 NC_005263.2 + 19153 1.14 0.000243
Target:  5'- cGCGACACCGAUCCGACCGCAUGGGCCg -3'
miRNA:   3'- -CGCUGUGGCUAGGCUGGCGUACCCGG- -5'
24186 3' -57.8 NC_005263.2 + 43053 0.79 0.087793
Target:  5'- cGCGACGCCGAcgucggccaauagUCGGCCGCc-GGGCCg -3'
miRNA:   3'- -CGCUGUGGCUa------------GGCUGGCGuaCCCGG- -5'
24186 3' -57.8 NC_005263.2 + 34008 0.78 0.099252
Target:  5'- gGCGACcgccgcgcaGCCGGUaCCaGCCGaCAUGGGCCg -3'
miRNA:   3'- -CGCUG---------UGGCUA-GGcUGGC-GUACCCGG- -5'
24186 3' -57.8 NC_005263.2 + 23274 0.76 0.149739
Target:  5'- cCGGCACCGccguugccgCCGGCCGUAUaGGCCg -3'
miRNA:   3'- cGCUGUGGCua-------GGCUGGCGUAcCCGG- -5'
24186 3' -57.8 NC_005263.2 + 38806 0.75 0.175834
Target:  5'- aGCGGCAUCGcugagcuugCCGAaauguCCgGCAUGGGCCg -3'
miRNA:   3'- -CGCUGUGGCua-------GGCU-----GG-CGUACCCGG- -5'
24186 3' -57.8 NC_005263.2 + 37494 0.74 0.199029
Target:  5'- aCGGCGCCGAcauUCCGGCgcuugccaagCGCAugcagaucgagcaaUGGGCCg -3'
miRNA:   3'- cGCUGUGGCU---AGGCUG----------GCGU--------------ACCCGG- -5'
24186 3' -57.8 NC_005263.2 + 27702 0.72 0.265833
Target:  5'- cCGGCGCCGG--CGGCCGCAUaGGCUu -3'
miRNA:   3'- cGCUGUGGCUagGCUGGCGUAcCCGG- -5'
24186 3' -57.8 NC_005263.2 + 44901 0.72 0.279396
Target:  5'- uCGGC-CCGAUCUGGCCGCGcucGCCg -3'
miRNA:   3'- cGCUGuGGCUAGGCUGGCGUaccCGG- -5'
24186 3' -57.8 NC_005263.2 + 18951 0.71 0.308161
Target:  5'- aGCG-CGCCGGUUCGAgCGCAgccGGCa -3'
miRNA:   3'- -CGCuGUGGCUAGGCUgGCGUac-CCGg -5'
24186 3' -57.8 NC_005263.2 + 14072 0.71 0.308161
Target:  5'- aGCG-CGCCGcgCCGGCC-CAUGucGGCUg -3'
miRNA:   3'- -CGCuGUGGCuaGGCUGGcGUAC--CCGG- -5'
24186 3' -57.8 NC_005263.2 + 40116 0.71 0.315697
Target:  5'- aCGGCAUCGggCCGACUcguGCAgcucUGGGCg -3'
miRNA:   3'- cGCUGUGGCuaGGCUGG---CGU----ACCCGg -5'
24186 3' -57.8 NC_005263.2 + 42253 0.71 0.323371
Target:  5'- uGCGGC-UCGAcUUCGACCGCAcgacGGCCg -3'
miRNA:   3'- -CGCUGuGGCU-AGGCUGGCGUac--CCGG- -5'
24186 3' -57.8 NC_005263.2 + 19763 0.7 0.339134
Target:  5'- gGCGGCGCuCG---UGGCCGUGUGGGCa -3'
miRNA:   3'- -CGCUGUG-GCuagGCUGGCGUACCCGg -5'
24186 3' -57.8 NC_005263.2 + 3930 0.7 0.347222
Target:  5'- gGCGGCagGCCGA-CCGGCaGguUGGcGCCg -3'
miRNA:   3'- -CGCUG--UGGCUaGGCUGgCguACC-CGG- -5'
24186 3' -57.8 NC_005263.2 + 4460 0.7 0.355446
Target:  5'- uGCGAgCACUucuucGUCCGugCGCGcGGGUCg -3'
miRNA:   3'- -CGCU-GUGGc----UAGGCugGCGUaCCCGG- -5'
24186 3' -57.8 NC_005263.2 + 31698 0.7 0.355446
Target:  5'- cCGACGCCGAguaCCGcacCCGCgAUGccGGCCa -3'
miRNA:   3'- cGCUGUGGCUa--GGCu--GGCG-UAC--CCGG- -5'
24186 3' -57.8 NC_005263.2 + 28785 0.7 0.372304
Target:  5'- uCGACAUCGA-CC-ACCGCAcagccggcGGGCCg -3'
miRNA:   3'- cGCUGUGGCUaGGcUGGCGUa-------CCCGG- -5'
24186 3' -57.8 NC_005263.2 + 27256 0.7 0.372304
Target:  5'- uGCGACGCUcgcgucgaauuGGcCCGACUGCGcGaGGCCg -3'
miRNA:   3'- -CGCUGUGG-----------CUaGGCUGGCGUaC-CCGG- -5'
24186 3' -57.8 NC_005263.2 + 12571 0.7 0.372304
Target:  5'- uGCGAacgugcuGCCGAUcgCCGGCgGCAcacuuacgGGGCCa -3'
miRNA:   3'- -CGCUg------UGGCUA--GGCUGgCGUa-------CCCGG- -5'
24186 3' -57.8 NC_005263.2 + 9603 0.7 0.372304
Target:  5'- uGCGACACguCGAcgCCGAuCUGCGUGaGcGCCu -3'
miRNA:   3'- -CGCUGUG--GCUa-GGCU-GGCGUAC-C-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.