miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24186 5' -54.5 NC_005263.2 + 14944 0.66 0.763264
Target:  5'- cCGAuCUGAUccGGAUcGuUCAGCGCGGg -3'
miRNA:   3'- -GCUuGACUAc-CCUGcCuAGUCGCGCC- -5'
24186 5' -54.5 NC_005263.2 + 33667 0.66 0.763264
Target:  5'- gCGGAgUcGAUGcGGGCgcgaaucuuGGcgCAGCGCGGc -3'
miRNA:   3'- -GCUUgA-CUAC-CCUG---------CCuaGUCGCGCC- -5'
24186 5' -54.5 NC_005263.2 + 9366 0.66 0.742559
Target:  5'- gCGAGCgccGgcGGcuGCGGGaauuUCAGCGCGGc -3'
miRNA:   3'- -GCUUGa--CuaCCc-UGCCU----AGUCGCGCC- -5'
24186 5' -54.5 NC_005263.2 + 32651 0.67 0.689036
Target:  5'- cCGAAagccuuccgGAUGGcGCGGGUCGGCgGCGa -3'
miRNA:   3'- -GCUUga-------CUACCcUGCCUAGUCG-CGCc -5'
24186 5' -54.5 NC_005263.2 + 42220 0.68 0.623104
Target:  5'- uCGAAUU--UGGGACGGAcuUCGGCccguaccgccuGCGGc -3'
miRNA:   3'- -GCUUGAcuACCCUGCCU--AGUCG-----------CGCC- -5'
24186 5' -54.5 NC_005263.2 + 3722 0.68 0.612085
Target:  5'- uGAGCgccucgcgcacGccGGGcCGGAUCAGCGCGu -3'
miRNA:   3'- gCUUGa----------CuaCCCuGCCUAGUCGCGCc -5'
24186 5' -54.5 NC_005263.2 + 21180 0.68 0.612085
Target:  5'- gGGGCcgGAcGcGGACGcGcgCGGCGCGGg -3'
miRNA:   3'- gCUUGa-CUaC-CCUGC-CuaGUCGCGCC- -5'
24186 5' -54.5 NC_005263.2 + 38516 0.69 0.590107
Target:  5'- uCGcGCUGccgcaAUGGGACGGcacgCAGCGCcuGGa -3'
miRNA:   3'- -GCuUGAC-----UACCCUGCCua--GUCGCG--CC- -5'
24186 5' -54.5 NC_005263.2 + 39688 0.69 0.583539
Target:  5'- uGGACgcGAUGGGGCGaGcgCgagcuggaaauggccGGCGCGGg -3'
miRNA:   3'- gCUUGa-CUACCCUGC-CuaG---------------UCGCGCC- -5'
24186 5' -54.5 NC_005263.2 + 19187 1.1 0.001049
Target:  5'- gCGAACUGAUGGGACGGAUCAGCGCGGc -3'
miRNA:   3'- -GCUUGACUACCCUGCCUAGUCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.