miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24190 3' -57.5 NC_005263.2 + 24407 0.66 0.620413
Target:  5'- uCGCGcaAGCGAccCGGUUGACgcaaGGCGuGCGg -3'
miRNA:   3'- -GCGC--UUGCUa-GUCAGCUGg---CCGC-CGC- -5'
24190 3' -57.5 NC_005263.2 + 15468 0.66 0.620413
Target:  5'- aGCG-ACGAUUuGcCGugCuGCGGCGg -3'
miRNA:   3'- gCGCuUGCUAGuCaGCugGcCGCCGC- -5'
24190 3' -57.5 NC_005263.2 + 17611 0.66 0.619336
Target:  5'- aCGCGcuGACGAUCAaaacGUCGccagggcGCCGGauguGGCGc -3'
miRNA:   3'- -GCGC--UUGCUAGU----CAGC-------UGGCCg---CCGC- -5'
24190 3' -57.5 NC_005263.2 + 8741 0.66 0.619336
Target:  5'- gGCGAGCGG--GGUCGagacguuuuuaacGCUGcGCGGCa -3'
miRNA:   3'- gCGCUUGCUagUCAGC-------------UGGC-CGCCGc -5'
24190 3' -57.5 NC_005263.2 + 30602 0.66 0.609648
Target:  5'- gCGCGAucaGAUCAuccucgggcauGUCGaggaugcugcGCCGGCcGGCGu -3'
miRNA:   3'- -GCGCUug-CUAGU-----------CAGC----------UGGCCG-CCGC- -5'
24190 3' -57.5 NC_005263.2 + 16555 0.66 0.609648
Target:  5'- gCGCGccgccugggcAGCGAcgccaaGGCCGGCGGCGa -3'
miRNA:   3'- -GCGC----------UUGCUagucagCUGGCCGCCGC- -5'
24190 3' -57.5 NC_005263.2 + 18538 0.66 0.609648
Target:  5'- cCGCGAGCGcguUCAagaaguUCGcgcagcccggcACCGGUGGCGu -3'
miRNA:   3'- -GCGCUUGCu--AGUc-----AGC-----------UGGCCGCCGC- -5'
24190 3' -57.5 NC_005263.2 + 6766 0.66 0.608572
Target:  5'- uGCGAuCGuuucgagaucguaAUCGGUgacgcCGGCgGGCGGCGu -3'
miRNA:   3'- gCGCUuGC-------------UAGUCA-----GCUGgCCGCCGC- -5'
24190 3' -57.5 NC_005263.2 + 23917 0.66 0.598901
Target:  5'- cCGCGAGCGugaCcGUCGcuUUGGCGGCu -3'
miRNA:   3'- -GCGCUUGCua-GuCAGCu-GGCCGCCGc -5'
24190 3' -57.5 NC_005263.2 + 24538 0.66 0.598901
Target:  5'- gGC-AACGGcggCGGcgCGGgCGGCGGCGg -3'
miRNA:   3'- gCGcUUGCUa--GUCa-GCUgGCCGCCGC- -5'
24190 3' -57.5 NC_005263.2 + 33467 0.66 0.588182
Target:  5'- gGCGGACGAgcgcguauggCuGaUCGACUGGCGacGCGa -3'
miRNA:   3'- gCGCUUGCUa---------GuC-AGCUGGCCGC--CGC- -5'
24190 3' -57.5 NC_005263.2 + 17315 0.66 0.588182
Target:  5'- gGCGcGCGAauUCGGccCGgcGCCGGUGGCu -3'
miRNA:   3'- gCGCuUGCU--AGUCa-GC--UGGCCGCCGc -5'
24190 3' -57.5 NC_005263.2 + 34655 0.66 0.588182
Target:  5'- uCGCGGACGAUUucuacaaaccGUCGACgUGGUGGa- -3'
miRNA:   3'- -GCGCUUGCUAGu---------CAGCUG-GCCGCCgc -5'
24190 3' -57.5 NC_005263.2 + 7690 0.66 0.588182
Target:  5'- -cCGggU--UCgAGUCGGCCGcGCGGCGu -3'
miRNA:   3'- gcGCuuGcuAG-UCAGCUGGC-CGCCGC- -5'
24190 3' -57.5 NC_005263.2 + 21140 0.66 0.577497
Target:  5'- gCGCGcAgGAcugCAGUcCGAcacCCGGCGGCu -3'
miRNA:   3'- -GCGCuUgCUa--GUCA-GCU---GGCCGCCGc -5'
24190 3' -57.5 NC_005263.2 + 856 0.66 0.577497
Target:  5'- gCGCGGACaGcgUAcccGUCGuGCCGGCcGGCGc -3'
miRNA:   3'- -GCGCUUG-CuaGU---CAGC-UGGCCG-CCGC- -5'
24190 3' -57.5 NC_005263.2 + 23094 0.66 0.577497
Target:  5'- gGCGucguuCGAUCagugGGUCGAuCCGGCaaaguucucGGCGg -3'
miRNA:   3'- gCGCuu---GCUAG----UCAGCU-GGCCG---------CCGC- -5'
24190 3' -57.5 NC_005263.2 + 28102 0.66 0.577497
Target:  5'- gCGCGGcCGAUCGcGUCGuugaCGGCaguGGCGc -3'
miRNA:   3'- -GCGCUuGCUAGU-CAGCug--GCCG---CCGC- -5'
24190 3' -57.5 NC_005263.2 + 40080 0.66 0.566857
Target:  5'- gCGCGGACGccucgcaagacAUCAaaaUCGA-CGGCGGCa -3'
miRNA:   3'- -GCGCUUGC-----------UAGUc--AGCUgGCCGCCGc -5'
24190 3' -57.5 NC_005263.2 + 9184 0.67 0.556266
Target:  5'- gCGCGaAGCGAcgCGGgugCGcaaACgGGCGGCGc -3'
miRNA:   3'- -GCGC-UUGCUa-GUCa--GC---UGgCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.