miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24190 5' -57.9 NC_005263.2 + 19297 0.67 0.505223
Target:  5'- cGCGUC-ACGGUCaCCGUGACgCGccCGg -3'
miRNA:   3'- uCGUAGuUGCCGG-GGCACUG-GCa-GCa -5'
24190 5' -57.9 NC_005263.2 + 2748 0.67 0.454896
Target:  5'- cAGCcgagAUC-GCGGCCgCCGUGcCgGUCGUg -3'
miRNA:   3'- -UCG----UAGuUGCCGG-GGCACuGgCAGCA- -5'
24190 5' -57.9 NC_005263.2 + 19757 0.67 0.454896
Target:  5'- cGCGcUGGCGGCgCUCGUGGCCGU-GUg -3'
miRNA:   3'- uCGUaGUUGCCG-GGGCACUGGCAgCA- -5'
24190 5' -57.9 NC_005263.2 + 21912 0.68 0.445156
Target:  5'- cGCAUCGcGCGGCCgCCGcgcggccgcaGACCGUCc- -3'
miRNA:   3'- uCGUAGU-UGCCGG-GGCa---------CUGGCAGca -5'
24190 5' -57.9 NC_005263.2 + 26933 0.68 0.407406
Target:  5'- cGCGUCcGCGuccGCCCCGUGGCguagccgccgggUGUCGg -3'
miRNA:   3'- uCGUAGuUGC---CGGGGCACUG------------GCAGCa -5'
24190 5' -57.9 NC_005263.2 + 23891 0.69 0.370861
Target:  5'- aAGCGUgAGCGcgcucgugagcgcGCCCgcgagCGUGACCGUCGc -3'
miRNA:   3'- -UCGUAgUUGC-------------CGGG-----GCACUGGCAGCa -5'
24190 5' -57.9 NC_005263.2 + 24786 0.69 0.354702
Target:  5'- cGGCGUCGGCGGCUcgCCG-GG-CGUCGg -3'
miRNA:   3'- -UCGUAGUUGCCGG--GGCaCUgGCAGCa -5'
24190 5' -57.9 NC_005263.2 + 46536 0.7 0.330212
Target:  5'- gGGUAUCGACGGCaCgCUGUcGGCCGgcuUCGUg -3'
miRNA:   3'- -UCGUAGUUGCCG-G-GGCA-CUGGC---AGCA- -5'
24190 5' -57.9 NC_005263.2 + 20595 0.7 0.330212
Target:  5'- gGGCAccgCGAcCGGCUUCGUGaacGCCGUCGa -3'
miRNA:   3'- -UCGUa--GUU-GCCGGGGCAC---UGGCAGCa -5'
24190 5' -57.9 NC_005263.2 + 34062 0.7 0.299534
Target:  5'- uGCGcUCGacGCGGCgCCCGUGGCCGaacCGUc -3'
miRNA:   3'- uCGU-AGU--UGCCG-GGGCACUGGCa--GCA- -5'
24190 5' -57.9 NC_005263.2 + 32907 0.74 0.164832
Target:  5'- cGGCGUCGGCGGCCCgcUGACCGgcuucCGa -3'
miRNA:   3'- -UCGUAGUUGCCGGGgcACUGGCa----GCa -5'
24190 5' -57.9 NC_005263.2 + 17918 1.07 0.000628
Target:  5'- cAGCAUCAACGGCCCCGUGACCGUCGUa -3'
miRNA:   3'- -UCGUAGUUGCCGGGGCACUGGCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.