miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24191 3' -52.1 NC_005263.2 + 19293 0.66 0.867945
Target:  5'- cGUgcGCGUCAcggucaccgUGAcGCGCCCgGAUgCGCa -3'
miRNA:   3'- aCA--UGCAGU---------ACU-UGCGGGaCUA-GCGc -5'
24191 3' -52.1 NC_005263.2 + 20767 0.66 0.842144
Target:  5'- cUGUAa--CAUGGccGCGCCgCUGAUCGuCGg -3'
miRNA:   3'- -ACAUgcaGUACU--UGCGG-GACUAGC-GC- -5'
24191 3' -52.1 NC_005263.2 + 23883 0.66 0.842144
Target:  5'- gGUACGacaagCGUGAGCGCgCUcgUGAgCGCGc -3'
miRNA:   3'- aCAUGCa----GUACUUGCG-GG--ACUaGCGC- -5'
24191 3' -52.1 NC_005263.2 + 10314 0.67 0.814247
Target:  5'- cGU-CGUCAacGAGCGCCacaUGGUUGCc -3'
miRNA:   3'- aCAuGCAGUa-CUUGCGGg--ACUAGCGc -5'
24191 3' -52.1 NC_005263.2 + 21314 0.68 0.753315
Target:  5'- cGUGCGgguUCAcGAACGCCgucgguCUGAuguUCGCGa -3'
miRNA:   3'- aCAUGC---AGUaCUUGCGG------GACU---AGCGC- -5'
24191 3' -52.1 NC_005263.2 + 42961 0.68 0.753315
Target:  5'- cGUGCGUCcgGGcUGCaCCaccagGAUCGCa -3'
miRNA:   3'- aCAUGCAGuaCUuGCG-GGa----CUAGCGc -5'
24191 3' -52.1 NC_005263.2 + 10284 0.68 0.742631
Target:  5'- cGUcgGCGaCAUGAGCGCCg-GAUgCGCGc -3'
miRNA:   3'- aCA--UGCaGUACUUGCGGgaCUA-GCGC- -5'
24191 3' -52.1 NC_005263.2 + 37591 0.68 0.720922
Target:  5'- cGUGCGUCAgcucgccGACGCgCUGGuuuaucagccgUCGCGg -3'
miRNA:   3'- aCAUGCAGUac-----UUGCGgGACU-----------AGCGC- -5'
24191 3' -52.1 NC_005263.2 + 26076 0.69 0.692157
Target:  5'- uUGcGCGUCAUGAaguagaugcggccgaGCGCguCCUGGUaCGCGc -3'
miRNA:   3'- -ACaUGCAGUACU---------------UGCG--GGACUA-GCGC- -5'
24191 3' -52.1 NC_005263.2 + 32169 0.7 0.608714
Target:  5'- cGUGCGaCAU--GCGCCC-GAUCGUGa -3'
miRNA:   3'- aCAUGCaGUAcuUGCGGGaCUAGCGC- -5'
24191 3' -52.1 NC_005263.2 + 33054 0.71 0.586183
Target:  5'- uUGUcggGCGUCAuccUGAucgguACGCCUUGGUCgGCGa -3'
miRNA:   3'- -ACA---UGCAGU---ACU-----UGCGGGACUAG-CGC- -5'
24191 3' -52.1 NC_005263.2 + 24691 0.71 0.552712
Target:  5'- --aGCG-CAUGAGCGCgUUGAUCGaCGg -3'
miRNA:   3'- acaUGCaGUACUUGCGgGACUAGC-GC- -5'
24191 3' -52.1 NC_005263.2 + 17475 1.09 0.002058
Target:  5'- cUGUACGUCAUGAACGCCCUGAUCGCGc -3'
miRNA:   3'- -ACAUGCAGUACUUGCGGGACUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.