miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24191 5' -55.2 NC_005263.2 + 32664 0.66 0.68109
Target:  5'- --gGAUgGcgCGGGuCGGCGGCgaUGUCGa -3'
miRNA:   3'- cagCUAgCuaGUCC-GCCGCCG--AUAGU- -5'
24191 5' -55.2 NC_005263.2 + 41731 0.66 0.670017
Target:  5'- cUCGAcgCGGgcggcaacuUCGGGCGGCacGGCgcgAUCAa -3'
miRNA:   3'- cAGCUa-GCU---------AGUCCGCCG--CCGa--UAGU- -5'
24191 5' -55.2 NC_005263.2 + 24545 0.66 0.670017
Target:  5'- -gCGG-CGGcgCGGGCGGCGGCg---- -3'
miRNA:   3'- caGCUaGCUa-GUCCGCCGCCGauagu -5'
24191 5' -55.2 NC_005263.2 + 17886 0.66 0.646658
Target:  5'- -gCGAaCGAUCAgucgaccGGCGGCGcGCcgAUCAg -3'
miRNA:   3'- caGCUaGCUAGU-------CCGCCGC-CGa-UAGU- -5'
24191 5' -55.2 NC_005263.2 + 47402 0.67 0.636623
Target:  5'- -aCGG-CGcucgCGGGCGGCGGCacgAUCGc -3'
miRNA:   3'- caGCUaGCua--GUCCGCCGCCGa--UAGU- -5'
24191 5' -55.2 NC_005263.2 + 18752 0.67 0.633277
Target:  5'- aUCGGcgCGAUCguAGGCGGCgcggugcucgcgcuGGUUAUCGu -3'
miRNA:   3'- cAGCUa-GCUAG--UCCGCCG--------------CCGAUAGU- -5'
24191 5' -55.2 NC_005263.2 + 27645 0.67 0.614321
Target:  5'- -cCGAUCGAcgugacgaacgUCucGGCGGCGGCa---- -3'
miRNA:   3'- caGCUAGCU-----------AGu-CCGCCGCCGauagu -5'
24191 5' -55.2 NC_005263.2 + 10332 0.67 0.614321
Target:  5'- cGUCGAucUCGcgCAGGCG-CGGCa---- -3'
miRNA:   3'- -CAGCU--AGCuaGUCCGCcGCCGauagu -5'
24191 5' -55.2 NC_005263.2 + 7273 0.68 0.569982
Target:  5'- uGUCGGUCGGgacGaGCGGCGGCa---- -3'
miRNA:   3'- -CAGCUAGCUaguC-CGCCGCCGauagu -5'
24191 5' -55.2 NC_005263.2 + 27792 0.69 0.515778
Target:  5'- -gUGAUCG-UCGGGaCGGCGGCcgccAUCGc -3'
miRNA:   3'- caGCUAGCuAGUCC-GCCGCCGa---UAGU- -5'
24191 5' -55.2 NC_005263.2 + 11022 0.69 0.505176
Target:  5'- cUCGGuUCGGcUCAGGUugcacGCGGCUAUCGc -3'
miRNA:   3'- cAGCU-AGCU-AGUCCGc----CGCCGAUAGU- -5'
24191 5' -55.2 NC_005263.2 + 6599 0.69 0.472937
Target:  5'- aGUCGAcgCGAUCGcguucGGCGGCGcGCUcggcgcgGUCGa -3'
miRNA:   3'- -CAGCUa-GCUAGU-----CCGCCGC-CGA-------UAGU- -5'
24191 5' -55.2 NC_005263.2 + 44109 0.69 0.463772
Target:  5'- --aGAUCGGUCAGGUgcgcugcucGGCGGCgcgCGc -3'
miRNA:   3'- cagCUAGCUAGUCCG---------CCGCCGauaGU- -5'
24191 5' -55.2 NC_005263.2 + 44891 0.7 0.443744
Target:  5'- cGUC-AUCGGggCGGGCGGCGGCc---- -3'
miRNA:   3'- -CAGcUAGCUa-GUCCGCCGCCGauagu -5'
24191 5' -55.2 NC_005263.2 + 35364 0.7 0.414641
Target:  5'- -gUGAUCcgcccuGAUCAGGUGGCGGCg--CGg -3'
miRNA:   3'- caGCUAG------CUAGUCCGCCGCCGauaGU- -5'
24191 5' -55.2 NC_005263.2 + 24596 0.71 0.377718
Target:  5'- uGUCGggCG--CAGGCGGUGGCggcgcagGUCAa -3'
miRNA:   3'- -CAGCuaGCuaGUCCGCCGCCGa------UAGU- -5'
24191 5' -55.2 NC_005263.2 + 40754 0.71 0.377718
Target:  5'- -gCGAUCG-UCAccGGCGGCGGCaaGUCGc -3'
miRNA:   3'- caGCUAGCuAGU--CCGCCGCCGa-UAGU- -5'
24191 5' -55.2 NC_005263.2 + 30627 0.72 0.324213
Target:  5'- -gCGcgCGAUCAgGGCguucaugacguacaGGCGGCUGUCGu -3'
miRNA:   3'- caGCuaGCUAGU-CCG--------------CCGCCGAUAGU- -5'
24191 5' -55.2 NC_005263.2 + 24083 0.77 0.160044
Target:  5'- cGUCGAcCGAUCcggccGGCGGCGGCUAc-- -3'
miRNA:   3'- -CAGCUaGCUAGu----CCGCCGCCGAUagu -5'
24191 5' -55.2 NC_005263.2 + 17509 1.08 0.000919
Target:  5'- cGUCGAUCGAUCAGGCGGCGGCUAUCAc -3'
miRNA:   3'- -CAGCUAGCUAGUCCGCCGCCGAUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.