miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24192 5' -51 NC_005263.2 + 31477 0.66 0.902504
Target:  5'- -aGUUCGGCGccUGGcCcgUCAGCGGc- -3'
miRNA:   3'- agCAAGCCGC--ACUuGuaAGUCGUCcu -5'
24192 5' -51 NC_005263.2 + 32671 0.66 0.895295
Target:  5'- gCGggUCGGCGgcgaugucGACGUgcgUCAGCAGGu -3'
miRNA:   3'- aGCa-AGCCGCac------UUGUA---AGUCGUCCu -5'
24192 5' -51 NC_005263.2 + 1305 0.66 0.895295
Target:  5'- gCGaUCGGCGUGAAUug-CAGCuGa- -3'
miRNA:   3'- aGCaAGCCGCACUUGuaaGUCGuCcu -5'
24192 5' -51 NC_005263.2 + 28629 0.66 0.887799
Target:  5'- cUCGUgaUCGGCGUGAGCAcgUCcuGcCAGa- -3'
miRNA:   3'- -AGCA--AGCCGCACUUGUa-AGu-C-GUCcu -5'
24192 5' -51 NC_005263.2 + 32471 0.67 0.855059
Target:  5'- gCGUagaUCGGCGUcGGcGCAUUCAGCGacGGc -3'
miRNA:   3'- aGCA---AGCCGCA-CU-UGUAAGUCGU--CCu -5'
24192 5' -51 NC_005263.2 + 6612 0.67 0.855059
Target:  5'- gCGUUCGGCG-GcGCGcUCGGCGcGGu -3'
miRNA:   3'- aGCAAGCCGCaCuUGUaAGUCGU-CCu -5'
24192 5' -51 NC_005263.2 + 15480 0.67 0.846222
Target:  5'- cCGUgcugCGGCGgcgcggUGAGCA-UCAGCAccGGAc -3'
miRNA:   3'- aGCAa---GCCGC------ACUUGUaAGUCGU--CCU- -5'
24192 5' -51 NC_005263.2 + 6997 0.67 0.846222
Target:  5'- -aGUUCGGCGaUGAcguCGUUCAGCu--- -3'
miRNA:   3'- agCAAGCCGC-ACUu--GUAAGUCGuccu -5'
24192 5' -51 NC_005263.2 + 7705 0.67 0.827828
Target:  5'- cCGcgCGGCGUGuGCAccgUUAGCAGa- -3'
miRNA:   3'- aGCaaGCCGCACuUGUa--AGUCGUCcu -5'
24192 5' -51 NC_005263.2 + 38134 0.68 0.818292
Target:  5'- cCGgaCGGCGUGcGCAgcCcGCAGGGc -3'
miRNA:   3'- aGCaaGCCGCACuUGUaaGuCGUCCU- -5'
24192 5' -51 NC_005263.2 + 26325 0.7 0.656734
Target:  5'- cCGgUCGGCGUGAAgGUcgguuGCGGGAc -3'
miRNA:   3'- aGCaAGCCGCACUUgUAagu--CGUCCU- -5'
24192 5' -51 NC_005263.2 + 13008 0.74 0.436622
Target:  5'- cCGgUCGGCGUGAugccgaguaGCuugaUCAGCGGGAu -3'
miRNA:   3'- aGCaAGCCGCACU---------UGua--AGUCGUCCU- -5'
24192 5' -51 NC_005263.2 + 25270 0.76 0.360673
Target:  5'- aCGUacaaCGGCGUGAAauuccagUCGGCAGGAg -3'
miRNA:   3'- aGCAa---GCCGCACUUgua----AGUCGUCCU- -5'
24192 5' -51 NC_005263.2 + 16668 1.1 0.002051
Target:  5'- gUCGUUCGGCGUGAACAUUCAGCAGGAc -3'
miRNA:   3'- -AGCAAGCCGCACUUGUAAGUCGUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.