miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24198 3' -62.2 NC_005263.2 + 34546 0.66 0.332526
Target:  5'- --aCGCCGCuCG--UGCCGcGCCCGUAc -3'
miRNA:   3'- uaaGCGGCGuGUgaGCGGC-CGGGCGU- -5'
24198 3' -62.2 NC_005263.2 + 20780 0.66 0.332526
Target:  5'- --gCGCCGCugA-UCGUCGGCgCGUc -3'
miRNA:   3'- uaaGCGGCGugUgAGCGGCCGgGCGu -5'
24198 3' -62.2 NC_005263.2 + 6613 0.66 0.332526
Target:  5'- cGUUCgGCgGCGCGCUCgGCgCGGUCgaGCAg -3'
miRNA:   3'- -UAAG-CGgCGUGUGAG-CG-GCCGGg-CGU- -5'
24198 3' -62.2 NC_005263.2 + 23554 0.66 0.332526
Target:  5'- --cCGUgGCGCAgcCGCCGccGCCCGCGc -3'
miRNA:   3'- uaaGCGgCGUGUgaGCGGC--CGGGCGU- -5'
24198 3' -62.2 NC_005263.2 + 1420 0.66 0.332526
Target:  5'- -gUCGgCGCGCGC-CGCCuuGGCUgCGCGc -3'
miRNA:   3'- uaAGCgGCGUGUGaGCGG--CCGG-GCGU- -5'
24198 3' -62.2 NC_005263.2 + 31148 0.66 0.332526
Target:  5'- -gUCGCgGUACGcCUUGCCGuGUCgGCGc -3'
miRNA:   3'- uaAGCGgCGUGU-GAGCGGC-CGGgCGU- -5'
24198 3' -62.2 NC_005263.2 + 32896 0.66 0.332526
Target:  5'- uUUCGUgGCGucgGCgUCGgCGGCCCGCu -3'
miRNA:   3'- uAAGCGgCGUg--UG-AGCgGCCGGGCGu -5'
24198 3' -62.2 NC_005263.2 + 34716 0.66 0.332526
Target:  5'- --gCGCCuGCACACgaUCGugucCCGGCCgGUAg -3'
miRNA:   3'- uaaGCGG-CGUGUG--AGC----GGCCGGgCGU- -5'
24198 3' -62.2 NC_005263.2 + 39059 0.66 0.332526
Target:  5'- cUUCGCgaaCGCGgACgucguaGCCGGCUCGCc -3'
miRNA:   3'- uAAGCG---GCGUgUGag----CGGCCGGGCGu -5'
24198 3' -62.2 NC_005263.2 + 42536 0.66 0.332526
Target:  5'- ---gGCCGCACAaUCGagcugaaCGGUCUGCAu -3'
miRNA:   3'- uaagCGGCGUGUgAGCg------GCCGGGCGU- -5'
24198 3' -62.2 NC_005263.2 + 5197 0.66 0.332526
Target:  5'- -cUUGCuCGCGCACUCGCguuccaGGCgaGCGc -3'
miRNA:   3'- uaAGCG-GCGUGUGAGCGg-----CCGggCGU- -5'
24198 3' -62.2 NC_005263.2 + 44662 0.66 0.33017
Target:  5'- ---aGCUGCACGCgcaggucaaccaggUCGCgaCGGCgCCGCAg -3'
miRNA:   3'- uaagCGGCGUGUG--------------AGCG--GCCG-GGCGU- -5'
24198 3' -62.2 NC_005263.2 + 25785 0.66 0.33017
Target:  5'- ---aGcCCGCGCGCUgagcgUGCCggcauaaaucaaacGGCCCGCAu -3'
miRNA:   3'- uaagC-GGCGUGUGA-----GCGG--------------CCGGGCGU- -5'
24198 3' -62.2 NC_005263.2 + 26480 0.66 0.324722
Target:  5'- --aCGCCGCGCG-UCGCC-GCaCUGCGc -3'
miRNA:   3'- uaaGCGGCGUGUgAGCGGcCG-GGCGU- -5'
24198 3' -62.2 NC_005263.2 + 47156 0.66 0.324722
Target:  5'- --cCGCCGC-UACgUCGCCG-CUCGCGg -3'
miRNA:   3'- uaaGCGGCGuGUG-AGCGGCcGGGCGU- -5'
24198 3' -62.2 NC_005263.2 + 32535 0.66 0.324722
Target:  5'- --aCGCgGCgACugUCggcagGCCGGCCaCGCGc -3'
miRNA:   3'- uaaGCGgCG-UGugAG-----CGGCCGG-GCGU- -5'
24198 3' -62.2 NC_005263.2 + 32680 0.66 0.324722
Target:  5'- --gCGCCGUACcuguacggccgGCUCaCCGGCuuGCu -3'
miRNA:   3'- uaaGCGGCGUG-----------UGAGcGGCCGggCGu -5'
24198 3' -62.2 NC_005263.2 + 44995 0.66 0.317055
Target:  5'- -aUCGaggCGCGCAUggCGCCguGGCUCGCGa -3'
miRNA:   3'- uaAGCg--GCGUGUGa-GCGG--CCGGGCGU- -5'
24198 3' -62.2 NC_005263.2 + 44699 0.66 0.317055
Target:  5'- --cUGCgCGCACACgUCGgCGGCCgacUGCAg -3'
miRNA:   3'- uaaGCG-GCGUGUG-AGCgGCCGG---GCGU- -5'
24198 3' -62.2 NC_005263.2 + 1941 0.66 0.317055
Target:  5'- --gCGCCgGCACcgGCgaCGCCGGCaaCCGCGu -3'
miRNA:   3'- uaaGCGG-CGUG--UGa-GCGGCCG--GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.