miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24198 5' -55.1 NC_005263.2 + 24547 0.66 0.680574
Target:  5'- --gGCGGcgCGGGCGGCG-GCGgcugcgCCa -3'
miRNA:   3'- auaCGCUa-GCCCGUCGUuCGCaa----GGc -5'
24198 5' -55.1 NC_005263.2 + 7378 0.66 0.677227
Target:  5'- --gGCGAUCGGGUugGuguucuuugcggucGCGAGUGcgCCGa -3'
miRNA:   3'- auaCGCUAGCCCG--U--------------CGUUCGCaaGGC- -5'
24198 5' -55.1 NC_005263.2 + 3835 0.66 0.635716
Target:  5'- cGUGCGGgugaagugcUCGGGgugguCAGCcGGCGUccagUCCGg -3'
miRNA:   3'- aUACGCU---------AGCCC-----GUCGuUCGCA----AGGC- -5'
24198 5' -55.1 NC_005263.2 + 32876 0.66 0.624466
Target:  5'- aUGUGCcggCGGGCGGCGAGU--UUCGu -3'
miRNA:   3'- -AUACGcuaGCCCGUCGUUCGcaAGGC- -5'
24198 5' -55.1 NC_005263.2 + 6708 0.66 0.624466
Target:  5'- -uUGCGGUCGGGCGcauGCucGAGCG--CCa -3'
miRNA:   3'- auACGCUAGCCCGU---CG--UUCGCaaGGc -5'
24198 5' -55.1 NC_005263.2 + 22450 0.66 0.624466
Target:  5'- --aGCGuuUCGGGUguGGgAGGCGUUCaCGa -3'
miRNA:   3'- auaCGCu-AGCCCG--UCgUUCGCAAG-GC- -5'
24198 5' -55.1 NC_005263.2 + 38417 0.67 0.613222
Target:  5'- --cGCGcGUCGGGUGcGCcGGCGUgacgCCGg -3'
miRNA:   3'- auaCGC-UAGCCCGU-CGuUCGCAa---GGC- -5'
24198 5' -55.1 NC_005263.2 + 47924 0.67 0.613222
Target:  5'- --gGCGcaCGGGCAGCGGGCucgccCCGg -3'
miRNA:   3'- auaCGCuaGCCCGUCGUUCGcaa--GGC- -5'
24198 5' -55.1 NC_005263.2 + 46166 0.67 0.601996
Target:  5'- aAUG-GAa-GGGCGGCGAGUG-UCCGg -3'
miRNA:   3'- aUACgCUagCCCGUCGUUCGCaAGGC- -5'
24198 5' -55.1 NC_005263.2 + 19739 0.67 0.57852
Target:  5'- cUAUGCGAUCGgcgcuggcgcgcuGGCGGCGcuCGUggCCGu -3'
miRNA:   3'- -AUACGCUAGC-------------CCGUCGUucGCAa-GGC- -5'
24198 5' -55.1 NC_005263.2 + 41885 0.68 0.557454
Target:  5'- --aGCGAUCGGGCA-UccGCuUUCCGa -3'
miRNA:   3'- auaCGCUAGCCCGUcGuuCGcAAGGC- -5'
24198 5' -55.1 NC_005263.2 + 3914 0.68 0.546453
Target:  5'- --aGCGc-CGGGCGGCAauGGCGgcaggCCGa -3'
miRNA:   3'- auaCGCuaGCCCGUCGU--UCGCaa---GGC- -5'
24198 5' -55.1 NC_005263.2 + 2897 0.68 0.524669
Target:  5'- -cUGU--UCGGGCGGCAGGUGgacgCCa -3'
miRNA:   3'- auACGcuAGCCCGUCGUUCGCaa--GGc -5'
24198 5' -55.1 NC_005263.2 + 4478 0.68 0.503224
Target:  5'- cGUGCGcgCGGGuCGGCGuGC-UUCCa -3'
miRNA:   3'- aUACGCuaGCCC-GUCGUuCGcAAGGc -5'
24198 5' -55.1 NC_005263.2 + 10390 0.68 0.503224
Target:  5'- --cGCGc-CGGGCcggccGGCGAGCGggUCCGg -3'
miRNA:   3'- auaCGCuaGCCCG-----UCGUUCGCa-AGGC- -5'
24198 5' -55.1 NC_005263.2 + 10152 0.68 0.503224
Target:  5'- ---aCGAggCGGGCAGCuuGGCGUcgCCGa -3'
miRNA:   3'- auacGCUa-GCCCGUCGu-UCGCAa-GGC- -5'
24198 5' -55.1 NC_005263.2 + 5586 0.68 0.503224
Target:  5'- uUGUGCGGccgUCGGGCAuccGCAcGGCGaggCCGu -3'
miRNA:   3'- -AUACGCU---AGCCCGU---CGU-UCGCaa-GGC- -5'
24198 5' -55.1 NC_005263.2 + 40753 0.69 0.482169
Target:  5'- --cGCGAUCGucaccggcGGCGGCAAGuCGcUCCu -3'
miRNA:   3'- auaCGCUAGC--------CCGUCGUUC-GCaAGGc -5'
24198 5' -55.1 NC_005263.2 + 19122 0.69 0.471802
Target:  5'- --cGCGAUCuGGCAGCAGcauGCGcccgaaUUCCGc -3'
miRNA:   3'- auaCGCUAGcCCGUCGUU---CGC------AAGGC- -5'
24198 5' -55.1 NC_005263.2 + 5244 0.69 0.461549
Target:  5'- --cGCGAUCaGGCgccgucaucAGCGGGCGgugCCGg -3'
miRNA:   3'- auaCGCUAGcCCG---------UCGUUCGCaa-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.