miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24199 5' -59.6 NC_005263.2 + 7018 0.66 0.47964
Target:  5'- aGCUUuuguUGcauGUCGCGCGCCGacggaUGGCGCAu -3'
miRNA:   3'- -CGAG----ACc--UAGCGCGCGGC-----GCUGCGUc -5'
24199 5' -59.6 NC_005263.2 + 45238 0.66 0.469753
Target:  5'- cGCcgCUGcGAcgucguUCGCGaaCGCUGCGACGCuGa -3'
miRNA:   3'- -CGa-GAC-CU------AGCGC--GCGGCGCUGCGuC- -5'
24199 5' -59.6 NC_005263.2 + 44515 0.66 0.466808
Target:  5'- --cCUGGccgucaccgagGUCGCGaagaucaaggaguaCGCCGCGACGCu- -3'
miRNA:   3'- cgaGACC-----------UAGCGC--------------GCGGCGCUGCGuc -5'
24199 5' -59.6 NC_005263.2 + 28297 0.66 0.459972
Target:  5'- gGUUC-GGAaacUGCGCGaUCGCGGCGCGa -3'
miRNA:   3'- -CGAGaCCUa--GCGCGC-GGCGCUGCGUc -5'
24199 5' -59.6 NC_005263.2 + 21185 0.66 0.459972
Target:  5'- ----cGGA-CGCGgaCGCgCGCGGCGCGGg -3'
miRNA:   3'- cgagaCCUaGCGC--GCG-GCGCUGCGUC- -5'
24199 5' -59.6 NC_005263.2 + 4885 0.66 0.459972
Target:  5'- cGCUCaccaUGuagCGCGCGCUGCGauaGCGCGc -3'
miRNA:   3'- -CGAG----ACcuaGCGCGCGGCGC---UGCGUc -5'
24199 5' -59.6 NC_005263.2 + 14671 0.66 0.459972
Target:  5'- cGCUCgUGGccgaccgcuaCGCGCG-CGCGGCGCu- -3'
miRNA:   3'- -CGAG-ACCua--------GCGCGCgGCGCUGCGuc -5'
24199 5' -59.6 NC_005263.2 + 20149 0.66 0.459972
Target:  5'- aGCUCUGGGccaUC-CGCGCCGUccggcucaucGACGaCGa -3'
miRNA:   3'- -CGAGACCU---AGcGCGCGGCG----------CUGC-GUc -5'
24199 5' -59.6 NC_005263.2 + 1283 0.66 0.4503
Target:  5'- cGC-CUGG--CGCGCGuuGCGuuACGCGa -3'
miRNA:   3'- -CGaGACCuaGCGCGCggCGC--UGCGUc -5'
24199 5' -59.6 NC_005263.2 + 2288 0.66 0.4503
Target:  5'- -gUCggcaGGUCGUGCGCCGUGGC-CGGc -3'
miRNA:   3'- cgAGac--CUAGCGCGCGGCGCUGcGUC- -5'
24199 5' -59.6 NC_005263.2 + 44047 0.66 0.440741
Target:  5'- cUUCUGGAUCuggaacacgGUGCuGCgGCGGCaGCGGg -3'
miRNA:   3'- cGAGACCUAG---------CGCG-CGgCGCUG-CGUC- -5'
24199 5' -59.6 NC_005263.2 + 35520 0.66 0.440741
Target:  5'- --aCUGGcgCGCcgacuGCGCCcgGCGGCGCGc -3'
miRNA:   3'- cgaGACCuaGCG-----CGCGG--CGCUGCGUc -5'
24199 5' -59.6 NC_005263.2 + 3541 0.66 0.440741
Target:  5'- aGCg--GGAUCaGCGCaguGCCGCGcaGCGCGu -3'
miRNA:   3'- -CGagaCCUAG-CGCG---CGGCGC--UGCGUc -5'
24199 5' -59.6 NC_005263.2 + 3306 0.66 0.431298
Target:  5'- uGC-CUGGG-CGCG-GCCGCG-CGguGu -3'
miRNA:   3'- -CGaGACCUaGCGCgCGGCGCuGCguC- -5'
24199 5' -59.6 NC_005263.2 + 22330 0.66 0.431298
Target:  5'- cGCUCa-GcgCGCGgGCUGCuucucGACGCAGa -3'
miRNA:   3'- -CGAGacCuaGCGCgCGGCG-----CUGCGUC- -5'
24199 5' -59.6 NC_005263.2 + 29015 0.67 0.421975
Target:  5'- gGCagUGcGUUGCGCaCCGCGACGCc- -3'
miRNA:   3'- -CGagACcUAGCGCGcGGCGCUGCGuc -5'
24199 5' -59.6 NC_005263.2 + 10713 0.67 0.421975
Target:  5'- cGCgaUGcacGUCGCGCaGCCaggGCGACGCAGa -3'
miRNA:   3'- -CGagACc--UAGCGCG-CGG---CGCUGCGUC- -5'
24199 5' -59.6 NC_005263.2 + 12570 0.67 0.409128
Target:  5'- aGCgcccgccCGCGCGCCGCcgGGCGCAGu -3'
miRNA:   3'- -CGagaccuaGCGCGCGGCG--CUGCGUC- -5'
24199 5' -59.6 NC_005263.2 + 30793 0.67 0.403697
Target:  5'- gGCgCcGGGccgaauUCGCGCGCCGUGGCGa-- -3'
miRNA:   3'- -CGaGaCCU------AGCGCGCGGCGCUGCguc -5'
24199 5' -59.6 NC_005263.2 + 569 0.67 0.402797
Target:  5'- cGCgcccuugCUGGAcagcugcagguauUCGaGCGCCGCGAUGUg- -3'
miRNA:   3'- -CGa------GACCU-------------AGCgCGCGGCGCUGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.