Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
242 | 3' | -55.9 | AC_000008.1 | + | 6346 | 1.08 | 0.000575 |
Target: 5'- cACGUAUUCGCGCGCAACGCACCGCCAu -3' miRNA: 3'- -UGCAUAAGCGCGCGUUGCGUGGCGGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 16047 | 0.66 | 0.529802 |
Target: 5'- cGCGgugGUggaggagGCGCGCAacuacACGCccacGCCGCCAc -3' miRNA: 3'- -UGCa--UAag-----CGCGCGU-----UGCG----UGGCGGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 16163 | 0.66 | 0.529802 |
Target: 5'- gGCGgaggCGCGUaGCAcguCGcCACCGCCGc -3' miRNA: 3'- -UGCauaaGCGCG-CGUu--GC-GUGGCGGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 12329 | 0.67 | 0.497407 |
Target: 5'- gGCGg---UGCGgGCGGCGCugCagaGCCAg -3' miRNA: 3'- -UGCauaaGCGCgCGUUGCGugG---CGGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 18596 | 0.67 | 0.455668 |
Target: 5'- cCGUccuagcCGCGCGUcccugcgcCGCGCCGCCAg -3' miRNA: 3'- uGCAuaa---GCGCGCGuu------GCGUGGCGGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 12685 | 0.68 | 0.44553 |
Target: 5'- aGCGUGagCGCGCGCAGCaGCAggGCa- -3' miRNA: 3'- -UGCAUaaGCGCGCGUUG-CGUggCGgu -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 21590 | 0.7 | 0.343087 |
Target: 5'- gACGUGgucCGUGUGCAccggcCGCACCGCg- -3' miRNA: 3'- -UGCAUaa-GCGCGCGUu----GCGUGGCGgu -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 11471 | 0.7 | 0.343087 |
Target: 5'- -aGUcccgCGCGCGCAcACGUggcgGCCGCCGa -3' miRNA: 3'- ugCAuaa-GCGCGCGU-UGCG----UGGCGGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 23943 | 0.7 | 0.334658 |
Target: 5'- gACG---UCGCGCGCAcCGCGuCCGCg- -3' miRNA: 3'- -UGCauaAGCGCGCGUuGCGU-GGCGgu -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 16414 | 0.7 | 0.318256 |
Target: 5'- aGCGgccugCGCGUGCccguGCGCACCcGCCc -3' miRNA: 3'- -UGCauaa-GCGCGCGu---UGCGUGG-CGGu -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 5477 | 0.71 | 0.297849 |
Target: 5'- gGCGUGgcccUUgGCGCGCAGCuugcccuuggaggagGCGCCGCaCGa -3' miRNA: 3'- -UGCAU----AAgCGCGCGUUG---------------CGUGGCG-GU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 17776 | 0.72 | 0.238883 |
Target: 5'- gGCGgcggCGCGCGU--CGCACCGUCGc -3' miRNA: 3'- -UGCauaaGCGCGCGuuGCGUGGCGGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 18664 | 0.68 | 0.435518 |
Target: 5'- gGCGg---CGCgGCGCAgggACGCGCgGCUAg -3' miRNA: 3'- -UGCauaaGCG-CGCGU---UGCGUGgCGGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 12087 | 0.68 | 0.44553 |
Target: 5'- cGCGg--UCGCugaGCu-CGCGCCGCCGg -3' miRNA: 3'- -UGCauaAGCGcg-CGuuGCGUGGCGGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 6461 | 0.67 | 0.480495 |
Target: 5'- cGCGguuggCGCGUGCAccuggugcccgacgaGCGCACCaCCGu -3' miRNA: 3'- -UGCauaa-GCGCGCGU---------------UGCGUGGcGGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 17452 | 0.67 | 0.486805 |
Target: 5'- gGCaUAUUCGgGCaGUAGCGCGCUGgCGg -3' miRNA: 3'- -UGcAUAAGCgCG-CGUUGCGUGGCgGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 26879 | 0.66 | 0.551824 |
Target: 5'- uACGgGUUCGUuggGCGCcaGACGCAgCGCUc -3' miRNA: 3'- -UGCaUAAGCG---CGCG--UUGCGUgGCGGu -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 25330 | 0.66 | 0.551824 |
Target: 5'- aACGcagUCGCGgacguaguCGCGGCGCGCCucGCCc -3' miRNA: 3'- -UGCauaAGCGC--------GCGUUGCGUGG--CGGu -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 11526 | 0.66 | 0.570756 |
Target: 5'- cACGUGUgCGCGCGCGGgacuaaucccgguuCGCG-CGUCGg -3' miRNA: 3'- -UGCAUAaGCGCGCGUU--------------GCGUgGCGGU- -5' |
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242 | 3' | -55.9 | AC_000008.1 | + | 12260 | 0.75 | 0.153567 |
Target: 5'- gACGUugccagCGCGCGCGgguGC-CACCGCCAg -3' miRNA: 3'- -UGCAuaa---GCGCGCGU---UGcGUGGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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