miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24202 3' -52 NC_005263.2 + 37326 0.66 0.825487
Target:  5'- cAUUCGACAagcagACCgCgCGCAGCuuugaugccGACGGCCg -3'
miRNA:   3'- uUGAGUUGU-----UGG-G-GUGUCG---------UUGUCGG- -5'
24202 3' -52 NC_005263.2 + 10140 0.66 0.825487
Target:  5'- -cUUCAGCGccaGCCggCGCGGCAuCGGCCg -3'
miRNA:   3'- uuGAGUUGU---UGGg-GUGUCGUuGUCGG- -5'
24202 3' -52 NC_005263.2 + 25875 0.66 0.815797
Target:  5'- cGGCgucgCAACcgGGCCgaCGcCGGCGACGGCCg -3'
miRNA:   3'- -UUGa---GUUG--UUGGg-GU-GUCGUUGUCGG- -5'
24202 3' -52 NC_005263.2 + 15694 0.66 0.815797
Target:  5'- cGGC-CGGCGAgCUCGCAGCGACuacgGGCg -3'
miRNA:   3'- -UUGaGUUGUUgGGGUGUCGUUG----UCGg -5'
24202 3' -52 NC_005263.2 + 44126 0.66 0.815797
Target:  5'- uGCUCGGCGgcgcgcGCCCguUA-CAACGGCCu -3'
miRNA:   3'- uUGAGUUGU------UGGGguGUcGUUGUCGG- -5'
24202 3' -52 NC_005263.2 + 27753 0.66 0.815797
Target:  5'- --aUCAGCcaugcgcGCCCCcgagguGCGGCGGCAGgCCa -3'
miRNA:   3'- uugAGUUGu------UGGGG------UGUCGUUGUC-GG- -5'
24202 3' -52 NC_005263.2 + 25571 0.66 0.815797
Target:  5'- -cCUCuuuGCGGCCCgucuCGGCAucgagcaggccGCAGCCg -3'
miRNA:   3'- uuGAGu--UGUUGGGgu--GUCGU-----------UGUCGG- -5'
24202 3' -52 NC_005263.2 + 24555 0.66 0.805894
Target:  5'- gGGCggCGGCGGCUgcgCCACGGuCGGCAcGCCg -3'
miRNA:   3'- -UUGa-GUUGUUGG---GGUGUC-GUUGU-CGG- -5'
24202 3' -52 NC_005263.2 + 15392 0.66 0.805894
Target:  5'- uGCaUUGGCGAUCCgCACGGCGgGCAGCa -3'
miRNA:   3'- uUG-AGUUGUUGGG-GUGUCGU-UGUCGg -5'
24202 3' -52 NC_005263.2 + 45159 0.66 0.79579
Target:  5'- cGCUCGcGCAGCUgCAgGGCuACAGCg -3'
miRNA:   3'- uUGAGU-UGUUGGgGUgUCGuUGUCGg -5'
24202 3' -52 NC_005263.2 + 30553 0.66 0.785497
Target:  5'- uGCUCGACGuccUCCCACAaCGACuucacGCCg -3'
miRNA:   3'- uUGAGUUGUu--GGGGUGUcGUUGu----CGG- -5'
24202 3' -52 NC_005263.2 + 16734 0.66 0.785497
Target:  5'- cGCg-AGCAG-CCCGCAGCAGCAGg- -3'
miRNA:   3'- uUGagUUGUUgGGGUGUCGUUGUCgg -5'
24202 3' -52 NC_005263.2 + 11138 0.67 0.775027
Target:  5'- cAACUggUAACAACcgcgCCCGCAGCcuAGCuGGCCg -3'
miRNA:   3'- -UUGA--GUUGUUG----GGGUGUCG--UUG-UCGG- -5'
24202 3' -52 NC_005263.2 + 44611 0.67 0.775027
Target:  5'- cGCgcgCGACAacuuGCCCgACucgcuGCGGCAGCUg -3'
miRNA:   3'- uUGa--GUUGU----UGGGgUGu----CGUUGUCGG- -5'
24202 3' -52 NC_005263.2 + 24170 0.67 0.773971
Target:  5'- cGCUCAcgaacgcGCaAGCCgCCAaAGCGACGGUCa -3'
miRNA:   3'- uUGAGU-------UG-UUGG-GGUgUCGUUGUCGG- -5'
24202 3' -52 NC_005263.2 + 38447 0.67 0.764395
Target:  5'- uGCUCGGCGgcgacauugcGCUCgACAGCGcaAGCCa -3'
miRNA:   3'- uUGAGUUGU----------UGGGgUGUCGUugUCGG- -5'
24202 3' -52 NC_005263.2 + 38853 0.67 0.764395
Target:  5'- gGACUCgAGCGGCgUCACGGuCGGCAcguucGCCg -3'
miRNA:   3'- -UUGAG-UUGUUGgGGUGUC-GUUGU-----CGG- -5'
24202 3' -52 NC_005263.2 + 34004 0.67 0.764395
Target:  5'- cGACggCGACcGCCgCGCAGCcgguacCAGCCg -3'
miRNA:   3'- -UUGa-GUUGuUGGgGUGUCGuu----GUCGG- -5'
24202 3' -52 NC_005263.2 + 13440 0.67 0.764395
Target:  5'- gGGCUCAGCaAAUUCCACcGCAcuuggGCuGCCu -3'
miRNA:   3'- -UUGAGUUG-UUGGGGUGuCGU-----UGuCGG- -5'
24202 3' -52 NC_005263.2 + 21110 0.67 0.753613
Target:  5'- uGAC-CAugAcgccuACCCCACuuuccGCAcuGCAGCCa -3'
miRNA:   3'- -UUGaGUugU-----UGGGGUGu----CGU--UGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.