miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24202 5' -60.8 NC_005263.2 + 14266 0.66 0.395199
Target:  5'- -cGGCgGCCgGCGCaacGCGCgCAUUGGGa -3'
miRNA:   3'- uaCCG-CGG-CGUGaacCGCG-GUAGCCC- -5'
24202 5' -60.8 NC_005263.2 + 41155 0.66 0.395199
Target:  5'- -cGGCGuUCGCGCggcgugGGCGgCCGUCGu- -3'
miRNA:   3'- uaCCGC-GGCGUGaa----CCGC-GGUAGCcc -5'
24202 5' -60.8 NC_005263.2 + 25948 0.66 0.386342
Target:  5'- cUGGCGCaauGCgaGCgucGCGCCGUCGaGGa -3'
miRNA:   3'- uACCGCGg--CG--UGaacCGCGGUAGC-CC- -5'
24202 5' -60.8 NC_005263.2 + 6057 0.66 0.386342
Target:  5'- uUGGCGgCGCGCUUcacGcGCGCCGaCaGGa -3'
miRNA:   3'- uACCGCgGCGUGAA---C-CGCGGUaGcCC- -5'
24202 5' -60.8 NC_005263.2 + 28099 0.66 0.383711
Target:  5'- uUGGCGCgGCcgaucgcgucguugACggcagUGGCGCCGUCu-- -3'
miRNA:   3'- uACCGCGgCG--------------UGa----ACCGCGGUAGccc -5'
24202 5' -60.8 NC_005263.2 + 37798 0.66 0.377618
Target:  5'- uGUGGCGCuCGUugACgacgGGCGCgCAUCcGGc -3'
miRNA:   3'- -UACCGCG-GCG--UGaa--CCGCG-GUAGcCC- -5'
24202 5' -60.8 NC_005263.2 + 35281 0.66 0.377618
Target:  5'- gAUGGCGCCaaGUGC--GGCGCCAuaaauguaaUCGGc -3'
miRNA:   3'- -UACCGCGG--CGUGaaCCGCGGU---------AGCCc -5'
24202 5' -60.8 NC_005263.2 + 16487 0.66 0.369026
Target:  5'- -cGGCGCUGCGCcgcGCGgCCGUCGcGa -3'
miRNA:   3'- uaCCGCGGCGUGaacCGC-GGUAGC-Cc -5'
24202 5' -60.8 NC_005263.2 + 11752 0.66 0.36057
Target:  5'- -aGGCGaCgCGaCACcUGGCGaCCAcUCGGGc -3'
miRNA:   3'- uaCCGC-G-GC-GUGaACCGC-GGU-AGCCC- -5'
24202 5' -60.8 NC_005263.2 + 30269 0.66 0.36057
Target:  5'- -cGGCGaaGCGCU--GCGCaAUCGGGc -3'
miRNA:   3'- uaCCGCggCGUGAacCGCGgUAGCCC- -5'
24202 5' -60.8 NC_005263.2 + 14960 0.66 0.35225
Target:  5'- -aGGCGCCGCGCcauggcUGGCGgCAgCGa- -3'
miRNA:   3'- uaCCGCGGCGUGa-----ACCGCgGUaGCcc -5'
24202 5' -60.8 NC_005263.2 + 11706 0.66 0.35225
Target:  5'- -aGGCGCUGCGag-GGCGUCAugUCGa- -3'
miRNA:   3'- uaCCGCGGCGUgaaCCGCGGU--AGCcc -5'
24202 5' -60.8 NC_005263.2 + 20773 0.66 0.35225
Target:  5'- cAUGGCcgcGCCGCugauCgucGGCGC-GUCGGGu -3'
miRNA:   3'- -UACCG---CGGCGu---Gaa-CCGCGgUAGCCC- -5'
24202 5' -60.8 NC_005263.2 + 14902 0.67 0.344067
Target:  5'- -aGGUGCgGCACgaGuGCGCCAagCGGc -3'
miRNA:   3'- uaCCGCGgCGUGaaC-CGCGGUa-GCCc -5'
24202 5' -60.8 NC_005263.2 + 38307 0.67 0.328114
Target:  5'- -aGGCuauGCCGCACgcggcgaGGCGCCcccguUCGGu -3'
miRNA:   3'- uaCCG---CGGCGUGaa-----CCGCGGu----AGCCc -5'
24202 5' -60.8 NC_005263.2 + 33301 0.67 0.319576
Target:  5'- -aGGUGCCGCugUccgaauuUGGCGCgAUCu-- -3'
miRNA:   3'- uaCCGCGGCGugA-------ACCGCGgUAGccc -5'
24202 5' -60.8 NC_005263.2 + 38015 0.67 0.312715
Target:  5'- uUGGUGCCGCACUgaaGCaGCuCGUCGa- -3'
miRNA:   3'- uACCGCGGCGUGAac-CG-CG-GUAGCcc -5'
24202 5' -60.8 NC_005263.2 + 10922 0.67 0.312715
Target:  5'- -gGGaUGCCGCACgugaucGCGUCGUgCGGGg -3'
miRNA:   3'- uaCC-GCGGCGUGaac---CGCGGUA-GCCC- -5'
24202 5' -60.8 NC_005263.2 + 14142 0.67 0.31196
Target:  5'- -cGGCcagcgcgGCCGC-CUUGGCGacuUCGGGc -3'
miRNA:   3'- uaCCG-------CGGCGuGAACCGCgguAGCCC- -5'
24202 5' -60.8 NC_005263.2 + 12561 0.67 0.304482
Target:  5'- -cGGCGCCGUagcgcccGCccGcGCGCCGcCGGGc -3'
miRNA:   3'- uaCCGCGGCG-------UGaaC-CGCGGUaGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.